FFCP PHASE1:Hg19::chr1:186946611..186946622,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:186946611..186946622,+ | |||
|coexpression_cluster_id=C139 | |coexpression_cluster_id=C139 | ||
|description=CAGE_peak_at_chr1:186946611..186946622,+ | |description=CAGE_peak_at_chr1:186946611..186946622,+ | ||
|id=chr1:186946611..186946622,+ | |id=chr1:186946611..186946622,+ | ||
|ontology_enrichment_celltype=CL:0002139!8.08e-43!24;CL:0000071!4.22e-38!18;CL:0002546!4.22e-38!18;CL:0000115!3.85e-28!35;CL:0002078!1.35e-21!44;CL:0002543!1.41e-18!6;CL:0000222!2.29e-18!119;CL:1000413!1.58e-16!9;CL:0000213!8.35e-16!57;CL:0000215!8.35e-16!57;CL:0002618!1.94e-14!3;CL:0000076!3.50e-12!62;CL:0002544!8.66e-12!6;CL:0000359!1.45e-11!32;CL:0002545!5.32e-10!2;CL:0002589!1.07e-09!2;CL:0000192!2.34e-08!42;CL:0000514!2.34e-08!42;CL:0000220!7.21e-08!246;CL:0002321!9.37e-08!248;CL:0005020!3.85e-07!6;CL:0002138!3.85e-07!6;CL:0005022!3.85e-07!6;CL:0002144!7.98e-07!3 | |ontology_enrichment_celltype=CL:0002139!8.08e-43!24;CL:0000071!4.22e-38!18;CL:0002546!4.22e-38!18;CL:0000115!3.85e-28!35;CL:0002078!1.35e-21!44;CL:0002543!1.41e-18!6;CL:0000222!2.29e-18!119;CL:1000413!1.58e-16!9;CL:0000213!8.35e-16!57;CL:0000215!8.35e-16!57;CL:0002618!1.94e-14!3;CL:0000076!3.50e-12!62;CL:0002544!8.66e-12!6;CL:0000359!1.45e-11!32;CL:0002545!5.32e-10!2;CL:0002589!1.07e-09!2;CL:0000192!2.34e-08!42;CL:0000514!2.34e-08!42;CL:0000220!7.21e-08!246;CL:0002321!9.37e-08!248;CL:0005020!3.85e-07!6;CL:0002138!3.85e-07!6;CL:0005022!3.85e-07!6;CL:0002144!7.98e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002618;2.61e-54;3!CL:0002543;2.54e-48;6!CL:0002139;3.58e-47;24!CL:0000071;8.69e-36;18!CL:0000115;1.32e-20;36!CL:0002078;6.76e-16;45!CL:0000213;8.98e-14;58!CL:0000215;8.98e-14;58!CL:0002138;7.78e-13;6!CL:0002545;3.13e-10;2!CL:0000076;5.43e-08;63!CL:0002144;2.47e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,2.61e-54,3;CL:0002543,2.55e-48,6;CL:0002139,3.47e-47,24;CL:0000071,7.94e-36,18;CL:0002546,7.94e-36,18;CL:0000115,2.19e-31,36;CL:0002078,4.72e-25,45;CL:0000213,2.32e-19,58;CL:0000215,2.32e-19,58;CL:0005020,8.27e-13,6;CL:0002138,8.27e-13,6;CL:0005022,8.27e-13,6;CL:0002545,2.72e-10,2;CL:0000076,3.41e-10,63;CL:0000222,4.87e-09,121;CL:0002144,2.47e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;8.69e-36;18!CL:0005022;7.78e-13;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3347;2.25e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,2.71e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!4.22e-38!18;UBERON:0004638!4.22e-38!18;UBERON:0004852!4.22e-38!18;UBERON:0000055!2.87e-36!69;UBERON:0002049!1.88e-33!79;UBERON:0007798!1.88e-33!79;UBERON:0001981!1.27e-32!60;UBERON:0007500!1.27e-32!60;UBERON:0004537!1.27e-32!60;UBERON:0006965!1.27e-32!60;UBERON:0000487!1.24e-30!22;UBERON:0006914!1.34e-26!25;UBERON:0004535!4.85e-24!110;UBERON:0004872!9.20e-24!84;UBERON:0001009!3.18e-23!113;UBERON:0001637!2.29e-22!42;UBERON:0003509!2.29e-22!42;UBERON:0004572!2.29e-22!42;UBERON:0004573!2.78e-19!33;UBERON:0004571!2.78e-19!33;UBERON:0003914!2.85e-18!118;UBERON:0003915!1.58e-16!9;UBERON:0004700!1.58e-16!9;UBERON:0001917!1.58e-16!9;UBERON:0000490!3.44e-16!138;UBERON:0003081!1.05e-12!216;UBERON:0001638!2.77e-12!9;UBERON:0003920!2.77e-12!9;UBERON:0004582!2.77e-12!9;UBERON:0005800!5.32e-10!2;UBERON:0001515!5.32e-10!2;UBERON:0001529!1.07e-09!2;UBERON:0007204!1.07e-09!2;UBERON:0000947!3.01e-09!21;UBERON:0010191!3.01e-09!21;UBERON:0002066!7.91e-09!5;UBERON:0000025!1.11e-08!194;UBERON:0000477!1.39e-08!286;UBERON:0004111!3.88e-08!241;UBERON:0001915!7.98e-07!3;UBERON:0001982!7.98e-07!3 | |ontology_enrichment_uberon=UBERON:0001986!4.22e-38!18;UBERON:0004638!4.22e-38!18;UBERON:0004852!4.22e-38!18;UBERON:0000055!2.87e-36!69;UBERON:0002049!1.88e-33!79;UBERON:0007798!1.88e-33!79;UBERON:0001981!1.27e-32!60;UBERON:0007500!1.27e-32!60;UBERON:0004537!1.27e-32!60;UBERON:0006965!1.27e-32!60;UBERON:0000487!1.24e-30!22;UBERON:0006914!1.34e-26!25;UBERON:0004535!4.85e-24!110;UBERON:0004872!9.20e-24!84;UBERON:0001009!3.18e-23!113;UBERON:0001637!2.29e-22!42;UBERON:0003509!2.29e-22!42;UBERON:0004572!2.29e-22!42;UBERON:0004573!2.78e-19!33;UBERON:0004571!2.78e-19!33;UBERON:0003914!2.85e-18!118;UBERON:0003915!1.58e-16!9;UBERON:0004700!1.58e-16!9;UBERON:0001917!1.58e-16!9;UBERON:0000490!3.44e-16!138;UBERON:0003081!1.05e-12!216;UBERON:0001638!2.77e-12!9;UBERON:0003920!2.77e-12!9;UBERON:0004582!2.77e-12!9;UBERON:0005800!5.32e-10!2;UBERON:0001515!5.32e-10!2;UBERON:0001529!1.07e-09!2;UBERON:0007204!1.07e-09!2;UBERON:0000947!3.01e-09!21;UBERON:0010191!3.01e-09!21;UBERON:0002066!7.91e-09!5;UBERON:0000025!1.11e-08!194;UBERON:0000477!1.39e-08!286;UBERON:0004111!3.88e-08!241;UBERON:0001915!7.98e-07!3;UBERON:0001982!7.98e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.69e-36;18!UBERON:0001986;8.69e-36;18!UBERON:0004852;8.69e-36;18!UBERON:0002066;5.98e-33;5!UBERON:0001638;2.06e-32;9!UBERON:0003920;2.06e-32;9!UBERON:0004582;2.06e-32;9!UBERON:0000487;2.70e-29;22!UBERON:0006914;8.74e-26;25!UBERON:0000490;3.00e-21;33!UBERON:0010260;1.17e-18;9!UBERON:0000055;3.25e-11;65!UBERON:0005800;3.13e-10;2!UBERON:0001515;3.13e-10;2!UBERON:0001473;7.26e-10;8!UBERON:0004536;7.26e-10;8!UBERON:0006558;7.26e-10;8!UBERON:0002049;3.92e-09;75!UBERON:0007798;3.92e-09;75!UBERON:0002465;4.50e-08;10!UBERON:0010523;2.47e-07;3!UBERON:0001915;2.47e-07;3!UBERON:0001982;2.47e-07;3!UBERON:0007500;3.18e-07;56!UBERON:0001981;3.18e-07;56!UBERON:0004537;3.18e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,7.94e-36,18;UBERON:0001986,7.94e-36,18;UBERON:0004852,7.94e-36,18;UBERON:0002066,5.98e-33,5;UBERON:0001638,2.06e-32,9;UBERON:0003920,2.06e-32,9;UBERON:0004582,2.06e-32,9;UBERON:0000487,2.51e-29,22;UBERON:0006914,8.19e-26,25;UBERON:0010260,1.17e-18,9;UBERON:0000055,1.86e-16,68;UBERON:0002049,2.71e-14,78;UBERON:0007798,2.71e-14,78;UBERON:0007500,6.78e-11,59;UBERON:0001981,6.78e-11,59;UBERON:0004537,6.78e-11,59;UBERON:0006965,6.78e-11,59;UBERON:0005800,2.72e-10,2;UBERON:0001515,2.72e-10,2;UBERON:0004535,4.30e-10,109;UBERON:0001473,7.59e-10,8;UBERON:0004536,7.59e-10,8;UBERON:0006558,7.59e-10,8;UBERON:0001009,8.28e-10,112;UBERON:0002465,4.66e-08,10;UBERON:0004872,1.09e-07,83;UBERON:0010523,2.47e-07,3;UBERON:0001915,2.47e-07,3;UBERON:0001982,2.47e-07,3 | |||
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|short_description=p@chr1:186946611..186946622,+ | |short_description=p@chr1:186946611..186946622,+ | ||
}} | }} |
Latest revision as of 01:33, 28 July 2015
Short description: | p@chr1:186946611..186946622, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:186946611..186946622, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 2.61e-54 | 3 |
vein endothelial cell | 2.55e-48 | 6 |
endothelial cell of vascular tree | 3.47e-47 | 24 |
blood vessel endothelial cell | 7.94e-36 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.94e-36 | 18 |
endothelial cell | 2.19e-31 | 36 |
meso-epithelial cell | 4.72e-25 | 45 |
lining cell | 2.32e-19 | 58 |
barrier cell | 2.32e-19 | 58 |
lymphangioblast | 8.27e-13 | 6 |
endothelial cell of lymphatic vessel | 8.27e-13 | 6 |
vascular lymphangioblast | 8.27e-13 | 6 |
thoracic aorta endothelial cell | 2.72e-10 | 2 |
squamous epithelial cell | 3.41e-10 | 63 |
mesodermal cell | 4.87e-09 | 121 |
capillary endothelial cell | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 7.94e-36 | 18 |
endothelium | 7.94e-36 | 18 |
cardiovascular system endothelium | 7.94e-36 | 18 |
umbilical vein | 5.98e-33 | 5 |
vein | 2.06e-32 | 9 |
venous blood vessel | 2.06e-32 | 9 |
venous system | 2.06e-32 | 9 |
simple squamous epithelium | 2.51e-29 | 22 |
squamous epithelium | 8.19e-26 | 25 |
umbilical blood vessel | 1.17e-18 | 9 |
vessel | 1.86e-16 | 68 |
vasculature | 2.71e-14 | 78 |
vascular system | 2.71e-14 | 78 |
epithelial tube open at both ends | 6.78e-11 | 59 |
blood vessel | 6.78e-11 | 59 |
blood vasculature | 6.78e-11 | 59 |
vascular cord | 6.78e-11 | 59 |
segment of aorta | 2.72e-10 | 2 |
thoracic aorta | 2.72e-10 | 2 |
cardiovascular system | 4.30e-10 | 109 |
lymphatic vessel | 7.59e-10 | 8 |
lymph vasculature | 7.59e-10 | 8 |
lymphatic part of lymphoid system | 7.59e-10 | 8 |
circulatory system | 8.28e-10 | 112 |
lymphoid system | 4.66e-08 | 10 |
splanchnic layer of lateral plate mesoderm | 1.09e-07 | 83 |
microcirculatory vessel | 2.47e-07 | 3 |
endothelium of capillary | 2.47e-07 | 3 |
capillary | 2.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 2.71e-19 | 1 |