FFCP PHASE1:Hg19::chr1:208060723..208060734,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:208060723..208060734,- | |||
|coexpression_cluster_id=C1470 | |coexpression_cluster_id=C1470 | ||
|description=CAGE_peak_at_chr1:208060723..208060734,- | |description=CAGE_peak_at_chr1:208060723..208060734,- | ||
|id=chr1:208060723..208060734,- | |id=chr1:208060723..208060734,- | ||
|ontology_enrichment_celltype=CL:0002139!1.85e-10!24;CL:0000115!2.38e-10!35;CL:0002078!1.54e-08!44 | |ontology_enrichment_celltype=CL:0002139!1.85e-10!24;CL:0000115!2.38e-10!35;CL:0002078!1.54e-08!44 | ||
|ontology_enrichment_celltype_v019=CL:0002138;5.98e-13;6!CL:0002144;1.52e-12;3!CL:0002139;4.06e-12;24!CL:0000115;5.22e-12;36!CL:0000511;1.36e-09;1!CL:0002625;1.36e-09;1!CL:0000216;1.36e-09;1!CL:0000213;1.32e-07;58!CL:0000215;1.32e-07;58!CL:0002078;1.74e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,5.89e-14,36;CL:0005020,5.08e-13,6;CL:0002138,5.08e-13,6;CL:0005022,5.08e-13,6;CL:0002144,1.62e-12,3;CL:0002139,3.40e-12,24;CL:0002078,5.90e-11,45;CL:0000213,1.87e-10,58;CL:0000215,1.87e-10,58;CL:0000511,8.91e-10,1;CL:0002625,8.91e-10,1;CL:0000216,8.91e-10,1 | |||
|ontology_enrichment_development_v019=CL:0005022;5.98e-13;6!UBERON:0010227;1.36e-09;1!UBERON:0004874;1.36e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.22e-14!115;UBERON:0004111!3.17e-08!241;UBERON:0000477!2.50e-07!286 | |ontology_enrichment_uberon=UBERON:0007023!8.22e-14!115;UBERON:0004111!3.17e-08!241;UBERON:0000477!2.50e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0010523;1.52e-12;3!UBERON:0001915;1.52e-12;3!UBERON:0001982;1.52e-12;3!UBERON:0001473;7.58e-10;8!UBERON:0004536;7.58e-10;8!UBERON:0006558;7.58e-10;8!UBERON:0007029;1.36e-09;1!UBERON:0002079;1.36e-09;1!UBERON:0000989;1.36e-09;1!UBERON:0002135;1.36e-09;1!UBERON:0001136;1.36e-09;1!UBERON:0001301;1.36e-09;1!UBERON:0001343;1.36e-09;1!UBERON:0008811;1.36e-09;1!UBERON:0004910;1.36e-09;1!UBERON:0004813;1.36e-09;1!UBERON:0005904;3.43e-09;4!UBERON:0002465;5.64e-08;10!UBERON:0003135;2.72e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,1.62e-12,3;UBERON:0001915,1.62e-12,3;UBERON:0001982,1.62e-12,3;UBERON:0004876,1.93e-12,11;UBERON:0001473,6.72e-10,8;UBERON:0004536,6.72e-10,8;UBERON:0006558,6.72e-10,8;UBERON:0001136,8.91e-10,1;UBERON:0001343,8.91e-10,1;UBERON:0004910,8.91e-10,1;UBERON:0005154,8.91e-10,1;UBERON:0005295,8.91e-10,1;UBERON:0004813,8.91e-10,1;UBERON:0005297,8.91e-10,1;UBERON:0005294,8.91e-10,1;UBERON:0010141,8.91e-10,1;UBERON:0005891,8.91e-10,1;UBERON:0000989,1.06e-09,1;UBERON:0008811,1.06e-09,1;UBERON:0006258,1.06e-09,1;UBERON:0005876,1.06e-09,1;UBERON:0004874,1.06e-09,1;UBERON:0007029,1.15e-09,1;UBERON:0002079,1.25e-09,1;UBERON:0002135,1.48e-09,1;UBERON:0001301,2.08e-09,1;UBERON:0005904,3.44e-09,4;UBERON:0002465,5.12e-08,10;UBERON:0003135,2.55e-07,11;UBERON:0000058,3.05e-07,19;UBERON:0000055,7.84e-07,68 | |||
|phase1_expression=0,0,0.422863212287913,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684372125364421,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.550236083880135,0,1.55050055501597,0,1.67360306382335,3.22263453687318,0,3.1728067481262,0,1.62028389576352,0.803697554556718,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,7.71136263451447,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18696051441731,1.91505370132367,2.54008299268659,0,0,0,0,0,1.01575066680962,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,1.06606955203727,0,0.31396051279005,0.498635045700469,0,0,0,0,0,0,3.7543545876604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,0.229160424011684,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.314727528809989,0,0,0,1.42939065274673,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0,0,0,0.320362237703084,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.126831620387814,0,0,1.48863353516788,0,0,0,0.336283722218824,0,0,0.532214220975833,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,1.45713297917742,0,0,0,0,0,0,0.0771741581079447,0.655678681511872,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0.267964130156178,0,0,0,0.476128862927481,0,0.0620747142958579,0,0.190941474834495,0.606351566874658,0.653150243690884,0.684466602170562,0.134704106029175,0.502055437748735,1.33064142618405,0,0,0,0,0,0.244482888365733,0,0,0.201273793591026,0 | |phase1_expression=0,0,0.422863212287913,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684372125364421,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.550236083880135,0,1.55050055501597,0,1.67360306382335,3.22263453687318,0,3.1728067481262,0,1.62028389576352,0.803697554556718,0,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,7.71136263451447,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.18696051441731,1.91505370132367,2.54008299268659,0,0,0,0,0,1.01575066680962,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0.66614393599564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,1.06606955203727,0,0.31396051279005,0.498635045700469,0,0,0,0,0,0,3.7543545876604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,2.41981432097328,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,0.229160424011684,0,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.314727528809989,0,0,0,1.42939065274673,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0,0,0,0.320362237703084,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.126831620387814,0,0,1.48863353516788,0,0,0,0.336283722218824,0,0,0.532214220975833,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615976841137482,0,1.45713297917742,0,0,0,0,0,0,0.0771741581079447,0.655678681511872,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0,0,0.128915775947154,0,0,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0.267964130156178,0,0,0,0.476128862927481,0,0.0620747142958579,0,0.190941474834495,0.606351566874658,0.653150243690884,0.684466602170562,0.134704106029175,0.502055437748735,1.33064142618405,0,0,0,0,0,0.244482888365733,0,0,0.201273793591026,0 | ||
|short_description=p@chr1:208060723..208060734,- | |short_description=p@chr1:208060723..208060734,- | ||
}} | }} |
Latest revision as of 03:10, 28 July 2015
Short description: | p@chr1:208060723..208060734, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:208060723..208060734, - |
Coexpression cluster: | C1470_acute_Renal_clear_Endothelial_diaphragm_skeletal_Lymphatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 5.89e-14 | 36 |
lymphangioblast | 5.08e-13 | 6 |
endothelial cell of lymphatic vessel | 5.08e-13 | 6 |
vascular lymphangioblast | 5.08e-13 | 6 |
capillary endothelial cell | 1.62e-12 | 3 |
endothelial cell of vascular tree | 3.40e-12 | 24 |
meso-epithelial cell | 5.90e-11 | 45 |
lining cell | 1.87e-10 | 58 |
barrier cell | 1.87e-10 | 58 |
androgen binding protein secreting cell | 8.91e-10 | 1 |
seminiferous tubule epithelial cell | 8.91e-10 | 1 |
Sertoli cell | 8.91e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 1.62e-12 | 3 |
endothelium of capillary | 1.62e-12 | 3 |
capillary | 1.62e-12 | 3 |
urogenital ridge | 1.93e-12 | 11 |
lymphatic vessel | 6.72e-10 | 8 |
lymph vasculature | 6.72e-10 | 8 |
lymphatic part of lymphoid system | 6.72e-10 | 8 |
mesothelium | 8.91e-10 | 1 |
seminiferous tubule of testis | 8.91e-10 | 1 |
epithelium of male gonad | 8.91e-10 | 1 |
epithelial cord | 8.91e-10 | 1 |
sex cord | 8.91e-10 | 1 |
seminiferous tubule epithelium | 8.91e-10 | 1 |
testis sex cord | 8.91e-10 | 1 |
genital ridge | 8.91e-10 | 1 |
primitive sex cord of indifferent gonad | 8.91e-10 | 1 |
coelomic epithelium | 8.91e-10 | 1 |
penis | 1.06e-09 | 1 |
intromittent organ | 1.06e-09 | 1 |
lateral plate mesenchyme | 1.06e-09 | 1 |
undifferentiated genital tubercle | 1.06e-09 | 1 |
somatopleure | 1.06e-09 | 1 |
surface | 1.15e-09 | 1 |
left cardiac atrium | 1.25e-09 | 1 |
mitral valve | 1.48e-09 | 1 |
epididymis | 2.08e-09 | 1 |
duct of male reproductive system | 3.44e-09 | 4 |
lymphoid system | 5.12e-08 | 10 |
male reproductive organ | 2.55e-07 | 11 |
duct | 3.05e-07 | 19 |
vessel | 7.84e-07 | 68 |