FFCP PHASE1:Hg19::chr1:227924238..227924241,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:227924238..227924241,+ | |||
|description=CAGE_peak_at_chr1:227924238..227924241,+ | |description=CAGE_peak_at_chr1:227924238..227924241,+ | ||
|id=chr1:227924238..227924241,+ | |id=chr1:227924238..227924241,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000785;1.20e-09;1!CL:0002591;1.20e-09;1!CL:0000819;1.20e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,1.62e-09,1;CL:0000819,1.76e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;4.26e-10;1!UBERON:0008425;4.26e-10;1!UBERON:0005425;1.20e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060073;1.20e-09;1!DOID:8675;1.20e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,1.76e-09,1;DOID:8675,1.76e-09,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.20e-09;1!UBERON:0001785;1.20e-09;1!UBERON:0002464;1.20e-09;1!UBERON:0004904;1.20e-09;1!UBERON:0001021;1.20e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,7.50e-10,1;UBERON:0001785,7.50e-10,1;UBERON:0002464,7.50e-10,1;UBERON:0004904,7.50e-10,1;UBERON:0001021,7.50e-10,1;UBERON:0003902,7.50e-10,1;UBERON:0005425,7.50e-10,1 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0,0,0,0.572471974262113,0.547497700291537,0.251085279189606,0.305653622991805,0.164201178899891,0.393553906568396,0.393364276848904,0.383829398097213,0,0,0,0,0.232401601740905,0.142169232487422,0,0,0.802177789880567,0.434021741431704,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0,0.306083892370903,0,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0,0.16072558669708,0,0.19891667719909,0.182664153764634,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0,0.263384084775077,0.196709770113833,1.96505381374582,0.205601498999509,0.167186495390678,0.32592226663359,0.473447805734733,1.94826728407911,0.111410456885174,0.589211814949674,0,0,0.768547918354051,1.43065282315866,0.164437904603676,0.829050053357545,0,0.444859689486181,0.267540828089713,1.04535523804977,0.339928028092699,0.383220493601921,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,1.06976078313403,1.44824403882799,0,0,0,0,0,0,0,0,0.378139268656271,0,0.175669571386252,0.196468613246569,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0.267899184852239,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0.570471821544449,0,0.23486899728753,0.323745888736263,0.140450806702248,0.204154171254893,0.122834317311768,0.103325781175765,0,0.494533858557114,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0.900273288253207,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0.276149695926898,0.323292113637624,0,0,0.169560592310488,0.193260853163297,0,0,0.365921118388786,0.530119073285941,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0,0.241011029883482,0,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,1.26755034821831,0,0,0,0.368965315629341,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0.790204397959275,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0.290633938513962,0,0,0.176096868026452,0,0.288239906833923,0.37872730027914,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0,0,0.224170287987055,0.394061520403854,0.862510299438069,0.77005821767849,0,1.30139853857622,0.773288812777695,0,0,0.749007023947182,0,0,0,0,0.271265023699736,0.207970861530807,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0.320182673410333,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0.438519753291869,0.784306353074702,0,0,0,0.103041011647722,0.183138929636687,0.495056999523528,0,0,0,0.290012154876366,0,0.307007349452259,0.137836572484531,0.107420244868274,0.290033387828457,0,0,0,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0.282810863907425,1.13008116620243,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0.411362273086194,0,0,0,0.320472213382419,0,0.245040215981032,0,0.144269212976445,0.142283686696828,0,0.59873811429845,0,0.423347165447766,0,0.280797178113459,0,0.313359791546046,0,0,0.1605880751037,0.403599414382095,0,0.343505344755765,0,0,0,0.976940477010201,0.278406173895242,0,0.270455678475983,0.99921590399346,0,0.18714054040822,0,0.121360521749513,0.222886768554957,0,0,0,0,0,0.422008249231538,0,0.494411622680279,0.63337622438398,0,0,0.755798243562828,0.102268682502155,0.984678443688556,0,0.0898683511473268,0.716084698702437,0,0,0,0,0,0.0927680981618513,0,0,2.36141999989728,0,0.341380344856499,0.508507300585533,0.472775363535873,0.344743373241465,0.874813840149763,0.694499979733169,0,0.482385754501632,0,0.663475559587348,0.886642856860642,0,0.32681539055697,0,0.153900517007594,0,0,0.448788222048861,0.108647371922008,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0.189753732724185,0.158936578980379,0.843992258112108,0.326465616318295,0.282706142867882,0.216388639742091,0.995261931078505,0.265372693510018,0,0.889563386041866,0.494255755786011,1.04421949505455,0.134802265961354,0,0.234264445725339,1.094728735294,0.19566461893209,0.242780379534093,0,2.41981432097328,0.30607276163049,0,0.300646838828985,0.311064574191741,0,0.330991955875499,0,0,0.284609546029793,0,0,0.293977192243133,0.0870592065804026,0,0.343972064943233,0.387025325156341,0.146178634172371,0.328461828212837,0,0,0.451961481561065,0,0.596143835108969,0.0633107959558787,0.391102765469606,0,0.213452994739353,0,0.288180834308212,0.458146384663663,0.171594997861965,0,0,0.471388069233591,0.135904206073614,0.418411385249333,0.101998217636322,0.577901179803038,0,0,0,0,0.788662062837943,0,0.458320848023367,0.717873024576814,0.199679000498991,0.429226048136571,0.223171457441873,0.201550417460179,0,0,0.315132729228895,0.0824158583811665,0.0674035438541849,0,0.169346664131569,0,1.0896272488926,0.160753148465019,0.275078873194468,1.24632101408756,0.2249738915515,0,0.303747783290123,0.335434687599266,0.157611414598396,0.104909176269996,0.211200673038813,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0.339936274560377,0,0,0.258565912723101,0.13223260174269,0.342173675768659,1.40963004463334,0,0.157204305099666,0,0.496166021811951,0.197611631897944,0.121792598380896,0.638341257770182,0,0.2506898940227,0,0,0.628216385000937,0.886068179966986,0.122026264901963,0.250381861413,0,0.332787154610557,0.0620964029413835,0.830091809617385,0.124980407962107,0.606596470166591,0,0,0,0.28984205722165,0,0,0,0.189403005275089,0,0,0.228840068396924,0,0,0,0,0.449803112163605,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0.343395705182793,0.673498977531838,0,0,0.214441591374926,0,0,0.231522474323834,0.489473409012935,0.71635536432595,0,0.438568099157414,0,0,0,0,0,0.607719912354764,0,0.584580926518165,0,0.327130788511688,0,0,0,0.19998739585493,0.106691729694141,0.172214979660816,0,0,0,0,1.15104934173287,0.107824811396682,0,0.218419276384028,0.33946505990805,0.425149840203366,0.867550349813015,0,0,0.23658523500376,0,0,0,0.192687675289379,0,0.478901577171454,0.615349092722265,0,0.0691572524642179,0.322951291263702,1.42769420259154,0,0.11796972334774,0,0,0.381382095467167,0,0,0,0.60511520611056,0.781514011233092,0.261906694481422,0,0.147856086217045,0.270150338473579,0.781078098613847,0.413373593002368,0.0634158101939068,0.546974809018219,0,0,0.175871244359621,0.383287282918786,0,0.672567444437648,0.606965604236632,0.227662191351298,0,0.115233987555779,0.685952037749674,0,0.0657727735628491,0.472775363535873,0.556157009460346,0,0.471346769748006,0,0,0,0.47775168788705,0.214429632529969,0.94808167039636,0.581207126840626,0,0,0,0.17071847709395,0,0.430227358820278,0.118332000730565,0,0,0,0,0,0.894843454382338,0,0,0,0,0,0,0,0.397901550322736,0.237840181555137,0,0.989464650708862,0.150962843566674,0.154348316215889,0.218559560503957,0,0,0.235676547101626,0,0,0.4226557275834,0,0.281951753939561,0.0644578879735772,0.299823467774787,0.178553938605658,0,0.160482733378337,0.730336388246517,0.917458566809082,0.286679166302903,0,0.203974470572744,1.30905207102113,0.5290268405154,0,0,0.432626562123789,0.126166424835079,0,2.15387451719443,0.407955318967927,0,1.01084389488329,0.250707539292375,0,0.267964130156178,0,0.413731983447581,0,0.23806443146374,0,0.0620747142958579,0.33639558774184,0,0.202117188958219,0.435433495793923,0,0.202056159043763,0.0717222053926763,0,0,0.106727345877715,0,0,2.34640942403454,0,0,0.665756774185513,0,0.320568492303233 | |phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0,0,0,0.572471974262113,0.547497700291537,0.251085279189606,0.305653622991805,0.164201178899891,0.393553906568396,0.393364276848904,0.383829398097213,0,0,0,0,0.232401601740905,0.142169232487422,0,0,0.802177789880567,0.434021741431704,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0,0.306083892370903,0,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0,0.16072558669708,0,0.19891667719909,0.182664153764634,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0,0.263384084775077,0.196709770113833,1.96505381374582,0.205601498999509,0.167186495390678,0.32592226663359,0.473447805734733,1.94826728407911,0.111410456885174,0.589211814949674,0,0,0.768547918354051,1.43065282315866,0.164437904603676,0.829050053357545,0,0.444859689486181,0.267540828089713,1.04535523804977,0.339928028092699,0.383220493601921,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,1.06976078313403,1.44824403882799,0,0,0,0,0,0,0,0,0.378139268656271,0,0.175669571386252,0.196468613246569,0,0,0,0.174129737299267,0.132957960518865,0,0,0,0.39752481473341,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0.267899184852239,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0.570471821544449,0,0.23486899728753,0.323745888736263,0.140450806702248,0.204154171254893,0.122834317311768,0.103325781175765,0,0.494533858557114,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0.900273288253207,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0.276149695926898,0.323292113637624,0,0,0.169560592310488,0.193260853163297,0,0,0.365921118388786,0.530119073285941,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0,0.241011029883482,0,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,1.26755034821831,0,0,0,0.368965315629341,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0.790204397959275,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0.290633938513962,0,0,0.176096868026452,0,0.288239906833923,0.37872730027914,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0,0,0.224170287987055,0.394061520403854,0.862510299438069,0.77005821767849,0,1.30139853857622,0.773288812777695,0,0,0.749007023947182,0,0,0,0,0.271265023699736,0.207970861530807,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0.0868836144680828,0,0,0,0.431428401637234,0.320182673410333,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0.438519753291869,0.784306353074702,0,0,0,0.103041011647722,0.183138929636687,0.495056999523528,0,0,0,0.290012154876366,0,0.307007349452259,0.137836572484531,0.107420244868274,0.290033387828457,0,0,0,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0.282810863907425,1.13008116620243,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0.411362273086194,0,0,0,0.320472213382419,0,0.245040215981032,0,0.144269212976445,0.142283686696828,0,0.59873811429845,0,0.423347165447766,0,0.280797178113459,0,0.313359791546046,0,0,0.1605880751037,0.403599414382095,0,0.343505344755765,0,0,0,0.976940477010201,0.278406173895242,0,0.270455678475983,0.99921590399346,0,0.18714054040822,0,0.121360521749513,0.222886768554957,0,0,0,0,0,0.422008249231538,0,0.494411622680279,0.63337622438398,0,0,0.755798243562828,0.102268682502155,0.984678443688556,0,0.0898683511473268,0.716084698702437,0,0,0,0,0,0.0927680981618513,0,0,2.36141999989728,0,0.341380344856499,0.508507300585533,0.472775363535873,0.344743373241465,0.874813840149763,0.694499979733169,0,0.482385754501632,0,0.663475559587348,0.886642856860642,0,0.32681539055697,0,0.153900517007594,0,0,0.448788222048861,0.108647371922008,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,0.189753732724185,0.158936578980379,0.843992258112108,0.326465616318295,0.282706142867882,0.216388639742091,0.995261931078505,0.265372693510018,0,0.889563386041866,0.494255755786011,1.04421949505455,0.134802265961354,0,0.234264445725339,1.094728735294,0.19566461893209,0.242780379534093,0,2.41981432097328,0.30607276163049,0,0.300646838828985,0.311064574191741,0,0.330991955875499,0,0,0.284609546029793,0,0,0.293977192243133,0.0870592065804026,0,0.343972064943233,0.387025325156341,0.146178634172371,0.328461828212837,0,0,0.451961481561065,0,0.596143835108969,0.0633107959558787,0.391102765469606,0,0.213452994739353,0,0.288180834308212,0.458146384663663,0.171594997861965,0,0,0.471388069233591,0.135904206073614,0.418411385249333,0.101998217636322,0.577901179803038,0,0,0,0,0.788662062837943,0,0.458320848023367,0.717873024576814,0.199679000498991,0.429226048136571,0.223171457441873,0.201550417460179,0,0,0.315132729228895,0.0824158583811665,0.0674035438541849,0,0.169346664131569,0,1.0896272488926,0.160753148465019,0.275078873194468,1.24632101408756,0.2249738915515,0,0.303747783290123,0.335434687599266,0.157611414598396,0.104909176269996,0.211200673038813,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0.339936274560377,0,0,0.258565912723101,0.13223260174269,0.342173675768659,1.40963004463334,0,0.157204305099666,0,0.496166021811951,0.197611631897944,0.121792598380896,0.638341257770182,0,0.2506898940227,0,0,0.628216385000937,0.886068179966986,0.122026264901963,0.250381861413,0,0.332787154610557,0.0620964029413835,0.830091809617385,0.124980407962107,0.606596470166591,0,0,0,0.28984205722165,0,0,0,0.189403005275089,0,0,0.228840068396924,0,0,0,0,0.449803112163605,0.155262956876259,0,0,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0.343395705182793,0.673498977531838,0,0,0.214441591374926,0,0,0.231522474323834,0.489473409012935,0.71635536432595,0,0.438568099157414,0,0,0,0,0,0.607719912354764,0,0.584580926518165,0,0.327130788511688,0,0,0,0.19998739585493,0.106691729694141,0.172214979660816,0,0,0,0,1.15104934173287,0.107824811396682,0,0.218419276384028,0.33946505990805,0.425149840203366,0.867550349813015,0,0,0.23658523500376,0,0,0,0.192687675289379,0,0.478901577171454,0.615349092722265,0,0.0691572524642179,0.322951291263702,1.42769420259154,0,0.11796972334774,0,0,0.381382095467167,0,0,0,0.60511520611056,0.781514011233092,0.261906694481422,0,0.147856086217045,0.270150338473579,0.781078098613847,0.413373593002368,0.0634158101939068,0.546974809018219,0,0,0.175871244359621,0.383287282918786,0,0.672567444437648,0.606965604236632,0.227662191351298,0,0.115233987555779,0.685952037749674,0,0.0657727735628491,0.472775363535873,0.556157009460346,0,0.471346769748006,0,0,0,0.47775168788705,0.214429632529969,0.94808167039636,0.581207126840626,0,0,0,0.17071847709395,0,0.430227358820278,0.118332000730565,0,0,0,0,0,0.894843454382338,0,0,0,0,0,0,0,0.397901550322736,0.237840181555137,0,0.989464650708862,0.150962843566674,0.154348316215889,0.218559560503957,0,0,0.235676547101626,0,0,0.4226557275834,0,0.281951753939561,0.0644578879735772,0.299823467774787,0.178553938605658,0,0.160482733378337,0.730336388246517,0.917458566809082,0.286679166302903,0,0.203974470572744,1.30905207102113,0.5290268405154,0,0,0.432626562123789,0.126166424835079,0,2.15387451719443,0.407955318967927,0,1.01084389488329,0.250707539292375,0,0.267964130156178,0,0.413731983447581,0,0.23806443146374,0,0.0620747142958579,0.33639558774184,0,0.202117188958219,0.435433495793923,0,0.202056159043763,0.0717222053926763,0,0,0.106727345877715,0,0,2.34640942403454,0,0,0.665756774185513,0,0.320568492303233 | ||
|short_description=p@chr1:227924238..227924241,+ | |short_description=p@chr1:227924238..227924241,+ | ||
}} | }} |
Latest revision as of 04:39, 28 July 2015
Short description: | p@chr1:227924238..227924241, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:227924238..227924241, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 1.62e-09 | 1 |
B-1 B cell | 1.76e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 7.50e-10 | 1 |
cranial nerve | 7.50e-10 | 1 |
nerve trunk | 7.50e-10 | 1 |
nerve connecting eye with brain | 7.50e-10 | 1 |
nerve | 7.50e-10 | 1 |
retinal neural layer | 7.50e-10 | 1 |
presumptive neural retina | 7.50e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 1.76e-09 | 1 |
lymphosarcoma | 1.76e-09 | 1 |