FFCP PHASE1:Hg19::chr1:78470496..78470507,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:78470496..78470507,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr1:78470496..78470507,- | |description=CAGE_peak_at_chr1:78470496..78470507,- | ||
|id=chr1:78470496..78470507,- | |id=chr1:78470496..78470507,- | ||
|ontology_enrichment_celltype=CL:0000860!7.83e-28!45;CL:0002057!2.95e-26!42;CL:0000839!1.79e-20!70;CL:0000766!5.38e-19!76;CL:0000557!9.42e-19!71;CL:0000738!1.25e-18!140;CL:0002031!4.48e-18!124;CL:0002009!5.17e-18!65;CL:0002194!6.84e-18!63;CL:0000576!6.84e-18!63;CL:0000040!6.84e-18!63;CL:0000559!6.84e-18!63;CL:0002087!4.72e-16!119;CL:0000037!4.49e-15!172;CL:0000566!4.49e-15!172;CL:0002032!1.85e-14!165;CL:0000837!1.85e-14!165;CL:0000763!2.07e-14!112;CL:0000049!2.07e-14!112;CL:0000988!4.23e-13!182 | |ontology_enrichment_celltype=CL:0000860!7.83e-28!45;CL:0002057!2.95e-26!42;CL:0000839!1.79e-20!70;CL:0000766!5.38e-19!76;CL:0000557!9.42e-19!71;CL:0000738!1.25e-18!140;CL:0002031!4.48e-18!124;CL:0002009!5.17e-18!65;CL:0002194!6.84e-18!63;CL:0000576!6.84e-18!63;CL:0000040!6.84e-18!63;CL:0000559!6.84e-18!63;CL:0002087!4.72e-16!119;CL:0000037!4.49e-15!172;CL:0000566!4.49e-15!172;CL:0002032!1.85e-14!165;CL:0000837!1.85e-14!165;CL:0000763!2.07e-14!112;CL:0000049!2.07e-14!112;CL:0000988!4.23e-13!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.94e-89;33!CL:0002057;9.94e-89;33!CL:0000473;6.70e-62;39!CL:0000234;6.70e-62;39!CL:0000576;4.38e-43;48!CL:0000766;2.30e-23;69!CL:0000623;1.44e-16;3!CL:0002087;2.17e-15;104!CL:0000763;1.47e-12;100!CL:0000738;1.10e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.93e-84,42;CL:0002057,5.93e-84,42;CL:0000473,8.82e-73,48;CL:0000234,8.82e-73,48;CL:0002194,3.92e-57,59;CL:0000576,3.92e-57,59;CL:0000040,3.92e-57,59;CL:0000559,3.92e-57,59;CL:0002009,4.10e-55,61;CL:0000839,1.36e-50,66;CL:0000557,9.11e-50,67;CL:0000766,9.90e-50,72;CL:0002087,8.91e-37,115;CL:0002031,5.23e-35,120;CL:0000738,1.68e-32,136;CL:0000763,1.95e-31,108;CL:0000049,1.95e-31,108;CL:0002032,1.56e-26,161;CL:0000837,1.56e-26,161;CL:0000037,3.54e-25,168;CL:0000988,1.36e-23,177;CL:0000623,2.10e-16,3;CL:0000825,2.10e-16,3;CL:0000134,1.07e-08,354;CL:0002320,2.10e-08,361;CL:0000219,2.21e-07,386;CL:0000048,7.82e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;5.42e-61;42!CL:0000049;2.44e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.41e-15!80;UBERON:0002390!8.94e-15!102;UBERON:0003061!8.94e-15!102;UBERON:0001474!1.27e-14!86;UBERON:0002193!2.01e-14!112;UBERON:0002405!1.20e-13!115;UBERON:0004765!9.91e-13!101;UBERON:0001434!9.91e-13!101;UBERON:0007023!5.54e-09!115;UBERON:0002204!1.65e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000996;7.82e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.63e-43,76;UBERON:0001474,8.89e-40,82;UBERON:0002405,2.15e-37,93;UBERON:0004765,8.54e-36,90;UBERON:0002390,3.22e-35,98;UBERON:0003061,3.22e-35,98;UBERON:0001434,1.06e-31,100;UBERON:0002193,1.82e-31,108;UBERON:0002204,1.97e-18,167;UBERON:0003081,1.69e-15,203;UBERON:0000926,8.65e-09,315;UBERON:0004120,8.65e-09,315;UBERON:0006603,8.65e-09,315;UBERON:0002384,5.22e-08,371;UBERON:0000996,7.39e-07,1 | |||
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| ||
|short_description=p@chr1:78470496..78470507,- | |short_description=p@chr1:78470496..78470507,- | ||
}} | }} |
Latest revision as of 10:30, 28 July 2015
Short description: | p@chr1:78470496..78470507, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:78470496..78470507, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.93e-84 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.93e-84 | 42 |
defensive cell | 8.82e-73 | 48 |
phagocyte | 8.82e-73 | 48 |
monopoietic cell | 3.92e-57 | 59 |
monocyte | 3.92e-57 | 59 |
monoblast | 3.92e-57 | 59 |
promonocyte | 3.92e-57 | 59 |
macrophage dendritic cell progenitor | 4.10e-55 | 61 |
myeloid lineage restricted progenitor cell | 1.36e-50 | 66 |
granulocyte monocyte progenitor cell | 9.11e-50 | 67 |
myeloid leukocyte | 9.90e-50 | 72 |
nongranular leukocyte | 8.91e-37 | 115 |
hematopoietic lineage restricted progenitor cell | 5.23e-35 | 120 |
leukocyte | 1.68e-32 | 136 |
myeloid cell | 1.95e-31 | 108 |
common myeloid progenitor | 1.95e-31 | 108 |
hematopoietic oligopotent progenitor cell | 1.56e-26 | 161 |
hematopoietic multipotent progenitor cell | 1.56e-26 | 161 |
hematopoietic stem cell | 3.54e-25 | 168 |
hematopoietic cell | 1.36e-23 | 177 |
natural killer cell | 2.10e-16 | 3 |
pro-NK cell | 2.10e-16 | 3 |
mesenchymal cell | 1.07e-08 | 354 |
connective tissue cell | 2.10e-08 | 361 |
motile cell | 2.21e-07 | 386 |
multi fate stem cell | 7.82e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.63e-43 | 76 |
bone element | 8.89e-40 | 82 |
immune system | 2.15e-37 | 93 |
skeletal element | 8.54e-36 | 90 |
hematopoietic system | 3.22e-35 | 98 |
blood island | 3.22e-35 | 98 |
skeletal system | 1.06e-31 | 100 |
hemolymphoid system | 1.82e-31 | 108 |
musculoskeletal system | 1.97e-18 | 167 |
lateral plate mesoderm | 1.69e-15 | 203 |
mesoderm | 8.65e-09 | 315 |
mesoderm-derived structure | 8.65e-09 | 315 |
presumptive mesoderm | 8.65e-09 | 315 |
connective tissue | 5.22e-08 | 371 |
vagina | 7.39e-07 | 1 |