FFCP PHASE1:Hg19::chr20:30307557..30307569,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:30307557..30307569,- | |||
|description=CAGE_peak_at_chr20:30307557..30307569,- | |description=CAGE_peak_at_chr20:30307557..30307569,- | ||
|id=chr20:30307557..30307569,- | |id=chr20:30307557..30307569,- | ||
|ontology_enrichment_celltype=CL:0000095!5.12e-07!17;CL:0000123!5.12e-07!17 | |ontology_enrichment_celltype=CL:0000095!5.12e-07!17;CL:0000123!5.12e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.50e-13;3!CL:0002581;8.61e-11;1!CL:0000082;3.66e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.82e-13,3;CL:0002581,6.77e-11,1;CL:0000082,3.95e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0006242;8.61e-11;1!UBERON:0001041;9.48e-08;30 | |||
|ontology_enrichment_disease=DOID:305!9.78e-10!106;DOID:299!1.23e-08!25 | |ontology_enrichment_disease=DOID:305!9.78e-10!106;DOID:299!1.23e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:3493;1.03e-20;2!DOID:3910;7.90e-20;2!DOID:0050615;8.50e-15;16!DOID:299;2.27e-13;25!DOID:1325;1.01e-12;7!DOID:3904;1.01e-12;7!DOID:0050619;2.52e-11;1!DOID:1357;2.52e-11;1!DOID:3112;8.61e-11;1!DOID:1324;2.70e-10;15!DOID:3905;5.12e-10;9!DOID:3908;1.72e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,9.37e-21,2;DOID:3910,1.06e-19,2;DOID:0050615,9.58e-15,16;DOID:299,2.13e-13,25;DOID:1325,1.36e-12,7;DOID:3904,1.36e-12,7;DOID:0050619,2.53e-11,1;DOID:1357,2.53e-11,1;DOID:305,5.90e-11,106;DOID:3112,9.05e-11,1;DOID:1324,2.99e-10,15;DOID:3905,6.46e-10,9;DOID:3908,1.93e-08,5;DOID:0050687,1.25e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000477!1.59e-07!286 | |ontology_enrichment_uberon=UBERON:0000477!1.59e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;7.90e-20;2!UBERON:0002173;7.90e-20;2!UBERON:0002186;7.90e-20;2!UBERON:0004821;1.50e-13;3!UBERON:0007499;1.50e-13;3!UBERON:0003215;1.50e-13;3!UBERON:0010368;1.50e-13;3!UBERON:0009911;1.50e-13;3!UBERON:0002299;1.50e-13;3!UBERON:0006524;1.50e-13;3!UBERON:0008874;1.50e-13;3!UBERON:0002169;1.50e-13;3!UBERON:0004894;1.50e-13;3!UBERON:0001764;2.52e-11;1!UBERON:0001825;2.52e-11;1!UBERON:0007195;8.61e-11;1!UBERON:0009856;2.15e-10;4!UBERON:0000058;4.56e-09;10!UBERON:0004802;3.66e-08;19!UBERON:0000115;3.66e-08;19!UBERON:0002048;4.53e-07;22!UBERON:0004807;4.53e-07;22!UBERON:0000117;4.53e-07;22!UBERON:0000171;4.53e-07;22!UBERON:0000170;4.53e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.06e-19,2;UBERON:0002173,1.06e-19,2;UBERON:0002186,1.06e-19,2;UBERON:0004821,1.82e-13,3;UBERON:0003215,1.82e-13,3;UBERON:0010368,1.82e-13,3;UBERON:0009911,1.82e-13,3;UBERON:0002299,1.82e-13,3;UBERON:0006524,1.82e-13,3;UBERON:0008874,1.82e-13,3;UBERON:0002169,1.82e-13,3;UBERON:0004894,1.82e-13,3;UBERON:0001764,2.53e-11,1;UBERON:0001825,2.53e-11,1;UBERON:0007195,1.46e-10,1;UBERON:0000058,3.73e-08,19;UBERON:0004802,3.95e-08,19;UBERON:0000115,3.95e-08,19;UBERON:0002048,4.84e-07,22;UBERON:0000117,4.84e-07,22;UBERON:0000171,4.84e-07,22;UBERON:0000170,4.84e-07,22;UBERON:0005597,4.84e-07,22;UBERON:0000118,4.84e-07,22 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0,0,0.492484232307152,2.04000691244253,0.940364164434263,0.286235987131057,0.273748850145768,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,0,0,0,0.189069634328136,0,0.087834785693126,0.261958150995425,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0.550236083880135,0.417989933073621,0,0.71153252537342,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0.570471821544449,0.149448680551801,0,0,0,0.204154171254893,0,0,0,0,0,0.718618141816238,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0,0,0.220587945464788,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15825045334063,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0.30239029332968,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,1.48418066444991,0,0.177561725313127,0,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0.902399225814824,0,0,0,0.316654886678627,0,0,0,0,0.541892875087706,2.00675909541941,0,0,0.447749509444357,0.219259876645935,0,0.256450125116389,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0.79312517629427,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0.539210106883961,1.07412704805365,0,0,0,1.11136990144637,0,0.0927680981618513,0,0.260427761085233,0.174919999992391,0,0,1.01701460117107,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0.19606253431774,0,0,0,0.421996129056054,1.95879369790977,0.141353071433941,0,0,0,0,0.296521128680622,0,0.104421949505455,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0.189559738885464,0,0,0.664653872707185,0,0,0,1.13843818411917,0.416024019039416,0.694238953340524,0,0.0870592065804026,0,0.171986032471617,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,1.92107695265417,0.19980960958213,0,0,0,0.576219191952599,0.248505071130865,0,0.407712618220842,0.732219924186332,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0.223171457441873,0,0,0,0.393915911536118,0.164831716762333,0.202210631562555,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.0524545881349981,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,1.53978154095896,0,0.106787412567695,0,0,0,0.197611631897944,0,0,0,0,0,0,6.12510975375914,0,0,0,0,0.221858103073705,0.0620964029413835,0.138348634936231,0.37494122388632,0,0,0,1.40500471742064,0,0,0,0,0.189403005275089,0,1.77962244319307,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0.358177682162975,0,0.219284049578707,0,0,0,0.256241518587947,0,0,0.138258436151731,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0.478901577171454,0,0,0,0.161475645631851,0,0,0.707818340086442,0,0,0,0,0,0,0,0,0,1.31017534008077,0,0,0,0,0.19024743058172,0,0.548257766857182,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0.118193840883968,0.667388411352415,0.078493092850514,0,0.280272163313789,0,0.863710364874486,0,0.0714765441766563,0,0,0,0,0,0.51215543128185,0,0,0.354996002191696,0,0,0.68732060563215,0.62041277132864,0,0.447421727191169,2.7482065412268,4.63288114932624,0,0.102662806856247,0,0,0.233939463462106,0,0,1.1294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.178553938605658,0,0.802413666891683,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0.897054900644907,0.0636471582781649,0,0.217716747896961,0,0,0.358611026963382,0,0.244209805832924,0,0,1.16772762738563,0,0.122241444182866,0,0,0,0 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| ||
|short_description=p@chr20:30307557..30307569,- | |short_description=p@chr20:30307557..30307569,- | ||
}} | }} |
Latest revision as of 12:50, 28 July 2015
Short description: | p@chr20:30307557..30307569, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:30307557..30307569, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.82e-13 | 3 |
perirenal preadipocyte | 6.77e-11 | 1 |
epithelial cell of lung | 3.95e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.06e-19 | 2 |
alveolar duct | 1.06e-19 | 2 |
bronchiole | 1.06e-19 | 2 |
pulmonary alveolus epithelium | 1.82e-13 | 3 |
alveolus | 1.82e-13 | 3 |
pulmonary lobule | 1.82e-13 | 3 |
lobule | 1.82e-13 | 3 |
alveolus of lung | 1.82e-13 | 3 |
alveolar system | 1.82e-13 | 3 |
pulmonary acinus | 1.82e-13 | 3 |
alveolar sac | 1.82e-13 | 3 |
alveolar wall | 1.82e-13 | 3 |
maxillary sinus | 2.53e-11 | 1 |
paranasal sinus | 2.53e-11 | 1 |
stroma of bone marrow | 1.46e-10 | 1 |
duct | 3.73e-08 | 19 |
respiratory tract epithelium | 3.95e-08 | 19 |
lung epithelium | 3.95e-08 | 19 |
lung | 4.84e-07 | 22 |
respiratory tube | 4.84e-07 | 22 |
respiration organ | 4.84e-07 | 22 |
pair of lungs | 4.84e-07 | 22 |
lung primordium | 4.84e-07 | 22 |
lung bud | 4.84e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 9.37e-21 | 2 |
lung adenocarcinoma | 1.06e-19 | 2 |
respiratory system cancer | 9.58e-15 | 16 |
adenocarcinoma | 2.13e-13 | 25 |
bronchus cancer | 1.36e-12 | 7 |
bronchogenic carcinoma | 1.36e-12 | 7 |
paranasal sinus cancer | 2.53e-11 | 1 |
maxillary sinus cancer | 2.53e-11 | 1 |
carcinoma | 5.90e-11 | 106 |
papillary adenocarcinoma | 9.05e-11 | 1 |
lung cancer | 2.99e-10 | 15 |
lung carcinoma | 6.46e-10 | 9 |
non-small cell lung carcinoma | 1.93e-08 | 5 |
cell type cancer | 1.25e-07 | 143 |