FFCP PHASE1:Hg19::chr20:44523712..44523736,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:44523712..44523736,+ | |||
|coexpression_cluster_id=C1869 | |||
|description=CAGE_peak_at_chr20:44523712..44523736,+ | |description=CAGE_peak_at_chr20:44523712..44523736,+ | ||
|id=chr20:44523712..44523736,+ | |id=chr20:44523712..44523736,+ | ||
|ontology_enrichment_celltype=CL:0000048!6.81e-13!430;CL:0000723!9.82e-12!436;CL:0000034!4.32e-11!444;CL:0002194!1.04e-10!63;CL:0000576!1.04e-10!63;CL:0000040!1.04e-10!63;CL:0000559!1.04e-10!63;CL:0002320!1.89e-10!365;CL:0002371!2.61e-10!591;CL:0002009!1.37e-09!65;CL:0000134!2.97e-09!358;CL:0000144!6.86e-09!625;CL:0000548!3.60e-08!679;CL:0000004!3.60e-08!679;CL:0000255!3.60e-08!679;CL:0000839!6.86e-08!70;CL:0000860!7.35e-08!45;CL:0002057!8.17e-08!42;CL:0000012!1.02e-07!682;CL:0000557!1.87e-07!71;CL:0000219!2.01e-07!390;CL:0000766!2.01e-07!76;CL:0000055!2.78e-07!180 | |ontology_enrichment_celltype=CL:0000048!6.81e-13!430;CL:0000723!9.82e-12!436;CL:0000034!4.32e-11!444;CL:0002194!1.04e-10!63;CL:0000576!1.04e-10!63;CL:0000040!1.04e-10!63;CL:0000559!1.04e-10!63;CL:0002320!1.89e-10!365;CL:0002371!2.61e-10!591;CL:0002009!1.37e-09!65;CL:0000134!2.97e-09!358;CL:0000144!6.86e-09!625;CL:0000548!3.60e-08!679;CL:0000004!3.60e-08!679;CL:0000255!3.60e-08!679;CL:0000839!6.86e-08!70;CL:0000860!7.35e-08!45;CL:0002057!8.17e-08!42;CL:0000012!1.02e-07!682;CL:0000557!1.87e-07!71;CL:0000219!2.01e-07!390;CL:0000766!2.01e-07!76;CL:0000055!2.78e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000473;2.42e-12;39!CL:0000234;2.42e-12;39!CL:0000860;5.15e-12;33!CL:0002057;5.15e-12;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,1.25e-15,427;CL:0000723,7.25e-15,433;CL:0002320,3.45e-14,361;CL:0000034,6.88e-14,441;CL:0000134,1.50e-13,354;CL:0000473,4.25e-13,48;CL:0000234,4.25e-13,48;CL:0000219,2.35e-11,386;CL:0002194,2.76e-11,59;CL:0000576,2.76e-11,59;CL:0000040,2.76e-11,59;CL:0000559,2.76e-11,59;CL:0000860,7.55e-11,42;CL:0002057,7.55e-11,42;CL:0002009,1.35e-10,61;CL:0000839,4.51e-09,66;CL:0000557,8.46e-09,67;CL:0000766,2.16e-08,72;CL:0000057,2.83e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;7.68e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.62e-11!448;UBERON:0004120!6.62e-11!448;UBERON:0006603!6.62e-11!448;UBERON:0003081!4.94e-10!216;UBERON:0002384!6.28e-10!375;UBERON:0002405!1.54e-08!115;UBERON:0002204!1.65e-08!167;UBERON:0002371!6.32e-07!80;UBERON:0002193!9.90e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.65e-07;9!UBERON:0000042;2.65e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,6.48e-14,371;UBERON:0000926,6.66e-12,315;UBERON:0004120,6.66e-12,315;UBERON:0006603,6.66e-12,315;UBERON:0003081,7.84e-10,203;UBERON:0002204,9.28e-09,167;UBERON:0002371,1.37e-08,76;UBERON:0002405,2.07e-07,93;UBERON:0001434,2.36e-07,100;UBERON:0001474,2.90e-07,82;UBERON:0004765,7.99e-07,90 | |||
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| ||
|short_description=p@chr20:44523712..44523736,+ | |short_description=p@chr20:44523712..44523736,+ | ||
}} | }} |
Latest revision as of 14:33, 28 July 2015
Short description: | p@chr20:44523712..44523736, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:44523712..44523736, + |
Coexpression cluster: | C1869_Monocytederived_leiomyoma_Osteoblast_Fibroblast_Prostate_mixed_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 1.25e-15 | 427 |
somatic stem cell | 7.25e-15 | 433 |
connective tissue cell | 3.45e-14 | 361 |
stem cell | 6.88e-14 | 441 |
mesenchymal cell | 1.50e-13 | 354 |
defensive cell | 4.25e-13 | 48 |
phagocyte | 4.25e-13 | 48 |
motile cell | 2.35e-11 | 386 |
monopoietic cell | 2.76e-11 | 59 |
monocyte | 2.76e-11 | 59 |
monoblast | 2.76e-11 | 59 |
promonocyte | 2.76e-11 | 59 |
classical monocyte | 7.55e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.55e-11 | 42 |
macrophage dendritic cell progenitor | 1.35e-10 | 61 |
myeloid lineage restricted progenitor cell | 4.51e-09 | 66 |
granulocyte monocyte progenitor cell | 8.46e-09 | 67 |
myeloid leukocyte | 2.16e-08 | 72 |
fibroblast | 2.83e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 6.48e-14 | 371 |
mesoderm | 6.66e-12 | 315 |
mesoderm-derived structure | 6.66e-12 | 315 |
presumptive mesoderm | 6.66e-12 | 315 |
lateral plate mesoderm | 7.84e-10 | 203 |
musculoskeletal system | 9.28e-09 | 167 |
bone marrow | 1.37e-08 | 76 |
immune system | 2.07e-07 | 93 |
skeletal system | 2.36e-07 | 100 |
bone element | 2.90e-07 | 82 |
skeletal element | 7.99e-07 | 90 |