FFCP PHASE1:Hg19::chr2:216288096..216288100,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216288096..216288100,- to FFCP PHASE1:Hg19::chr2:216288096..216288100,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:216288096..216288100,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_at_chr2:216288096..216288100,- | |||
|id=chr2:216288096..216288100,- | |||
|ontology_enrichment_celltype=CL:0000057!6.52e-27!75;CL:0000055!2.21e-23!180;CL:0002620!6.80e-15!23;CL:0002371!2.30e-13!591;CL:0000048!4.53e-13!430;CL:0000034!7.55e-13!444;CL:0000723!1.03e-12!436;CL:0000144!2.50e-12!625;CL:0002320!4.23e-10!365;CL:0000134!6.26e-09!358;CL:0000548!8.56e-09!679;CL:0000004!8.56e-09!679;CL:0000255!8.56e-09!679;CL:0000219!1.33e-08!390;CL:0002334!1.41e-08!12;CL:0000012!1.64e-08!682;CL:0000499!6.19e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002570;1.89e-09;8!CL:0002620;4.54e-09;23!CL:0000134;3.13e-08;55!CL:0000723;5.50e-08;61!CL:0000569;1.10e-07;4!CL:0002561;3.05e-07;2!CL:0000048;3.84e-07;58!CL:0002549;4.70e-07;2!CL:0000057;7.31e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.92e-15,76;CL:0002320,9.01e-11,361;CL:0000134,1.64e-10,354;CL:0000048,7.98e-10,427;CL:0000723,1.64e-09,433;CL:0002570,1.97e-09,8;CL:0002620,3.14e-09,23;CL:0000034,4.14e-09,441;CL:0000219,1.44e-08,386;CL:0000569,1.24e-07,4;CL:0000011,1.24e-07,4;CL:0002561,1.88e-07,2;CL:0002549,5.58e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000011;1.10e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!4.48e-12!45;UBERON:0002416!4.48e-12!45;UBERON:0002384!2.51e-10!375;UBERON:0003102!1.24e-09!95;UBERON:0002097!2.36e-09!40;UBERON:0001013!4.40e-09!14;UBERON:0000914!5.45e-07!83;UBERON:0002329!5.45e-07!83;UBERON:0003077!5.45e-07!83;UBERON:0003059!5.45e-07!83;UBERON:0007282!5.45e-07!83;UBERON:0009618!5.45e-07!83;UBERON:0007285!5.45e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;5.65e-13;14!UBERON:0002199;4.23e-08;46!UBERON:0002416;4.23e-08;46!UBERON:0002097;1.96e-07;41!UBERON:0005406;2.65e-07;2!UBERON:0005933;3.05e-07;2!UBERON:0005942;3.05e-07;2!UBERON:0005932;3.05e-07;2!UBERON:0005629;4.70e-07;2!UBERON:0005358;4.70e-07;2!UBERON:0001886;4.70e-07;2!UBERON:0004086;4.70e-07;2!UBERON:0005282;4.70e-07;2!UBERON:0005281;4.70e-07;2!UBERON:0002384;9.12e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,4.86e-13,14;UBERON:0002384,1.50e-11,371;UBERON:0002199,5.95e-10,46;UBERON:0002416,5.95e-10,46;UBERON:0002097,8.29e-10,41;UBERON:0005933,1.88e-07,2;UBERON:0005942,1.88e-07,2;UBERON:0005932,1.88e-07,2;UBERON:0005406,2.07e-07,2;UBERON:0005629,5.58e-07,2;UBERON:0005358,5.58e-07,2;UBERON:0001886,5.58e-07,2;UBERON:0004086,5.58e-07,2;UBERON:0005282,5.58e-07,2;UBERON:0005281,5.58e-07,2 | |||
|phase1_expression=0.363356758541113,2.14100523890983,0.422863212287913,2.00146596706261,1.34088328328186,1.74467704820074,2.53299878168311,0.631719873426831,0.261185628199839,0,0,0,1.84636884759917,0.37129905888014,0.331397375727916,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.722878304769133,0,0.579386075843295,2.3858578411533,11.1926020169606,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0.81014194788176,0.17859945656816,0,0,0,0,0,0,0,0,0,0.886413581652058,2.25095607382472,5.73673241497627,0.709336764396714,2.80338800071154,0,0.74000264525148,2.48968828319813,1.75123873690594,0.980771418680752,1.05950199351452,2.88087962239999,0,2.18512053781224,0,1.94283284717341,0.352303495931295,0.323745888736263,0.421352420106746,0.204154171254893,0.368502951935304,0.309977343527296,1.18800285728205,0,0,0.718618141816238,0.168336113954066,0,0,0,0.612975591598039,0.600952235626387,0.340296549480063,3.04962380671065,0.427114777637135,0.635795703478686,2.40072876867522,0.92747276314595,2.57640540045629,0.37223371266318,0.506328996723799,1.85130309806277,1.7670364197088,0.644349290496095,1.93975268182574,1.06502877754984,0.503760491138201,0.847802961552438,0.193260853163297,0,0,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,0,1.28648187638577,0,1.85747171212792,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0,0,0.122988438543114,0,0.219500570817251,0,0,0,0,0,0,0,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0.839910640994298,0,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0,0.285826432630578,0,1.74384027533312,0.07333828582095,0.387815147273333,3.57656445851882,1.690605505112,0,0,0,0,0.266422179016099,0.285955987316295,1.08524321078289,0.823240336780769,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.099972991182057,0,0,0,0.718874566474748,0,0,0.289562613335158,1.43833425785268,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,2.70362119990049,2.85486382075459,0.946214490203608,0.819989904948992,0,0,2.0694614258501,0,0.737476674166813,0.434418072340414,0.587403472388222,1.37257369524342,0,0,0,0,0,0.30239029332968,0.992431231275107,2.30192959932094,3.08726103876381,0.768834895534206,0.511707249066704,0.321707842287215,4.45254199334973,0.462629081407967,0.532685175939381,0.246381468041427,0,1.27831416305955,0,0.802025881213139,0,0.229628896329213,0.728364672026868,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,1.07834031980251,2.14905144616581,0.689182862422653,0.537101224341368,0.580066775656914,0.170453254832202,0.0890320356467374,0,0.384380134730212,0,0.10115778085555,0,5.66662224295152,0,0.616067160352178,0,0,0.37064843820784,0.143124886741991,0.372158369359667,0,0.190630193923825,0,0,0,0,0.359744915166629,0,0.235624804691373,0,0,0,0,0.243713489631284,0,0.272999822815972,0,0,0,0.66343897524122,2.63070531152258,0,0,0,0,0.563391205064483,0.143411352204052,0.0982490410131212,0.35667105148125,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0.376575203107117,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.296964680832639,0,0,0,0.779160935160341,0,0,0.19924798825107,0,0,0,0,3.11039587661807,0,0,0,0.0986434056369336,0,1.11136990144637,0,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.29403015302991,0.641183153813036,25.0526344728758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0.126373159256976,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0.157566364614447,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35857467866569,0,0,0,0,0,0,0.653174720218818,0,0,1.36310417428337,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49254802886874,3.03827302801392,1.10961172300523,2.46223906857616,2.0125432140206,0,2.28840068396924,3.78077309408098,1.24349760466224,0.73927574994817,0.159296767163702,0,0.931577741257556,0,3.45594228925393,0.521745061811734,0.300515217994437,0,0,1.45478927362048,1.28892668450986,0.464033759878494,1.19428766609585,0,0,0.336749488765919,0,0,0,0,0,0,0.244736704506468,0.71635536432595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0.786329709279482,0,0,0,0.123935764259002,0,0.636008701306837,0,0,1.05802783107205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0.52761373307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| ||
|short_description=p@chr2:216288096..216288100,- | |||
}} | }} |
Latest revision as of 06:14, 29 July 2015
Short description: | p@chr2:216288096..216288100, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:216288096..216288100, - |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.92e-15 | 76 |
connective tissue cell | 9.01e-11 | 361 |
mesenchymal cell | 1.64e-10 | 354 |
multi fate stem cell | 7.98e-10 | 427 |
somatic stem cell | 1.64e-09 | 433 |
mesenchymal stem cell of adipose | 1.97e-09 | 8 |
skin fibroblast | 3.14e-09 | 23 |
stem cell | 4.14e-09 | 441 |
motile cell | 1.44e-08 | 386 |
cardiac mesenchymal cell | 1.24e-07 | 4 |
migratory trunk neural crest cell | 1.24e-07 | 4 |
outer root sheath cell | 1.88e-07 | 2 |
fibroblast of choroid plexus | 5.58e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 4.86e-13 | 14 |
connective tissue | 1.50e-11 | 371 |
integument | 5.95e-10 | 46 |
integumental system | 5.95e-10 | 46 |
skin of body | 8.29e-10 | 41 |
hair root sheath | 1.88e-07 | 2 |
hair outer root sheath | 1.88e-07 | 2 |
bulb of hair follicle | 1.88e-07 | 2 |
perirenal fat | 2.07e-07 | 2 |
vascular plexus | 5.58e-07 | 2 |
ventricle of nervous system | 5.58e-07 | 2 |
choroid plexus | 5.58e-07 | 2 |
brain ventricle | 5.58e-07 | 2 |
ventricular system of brain | 5.58e-07 | 2 |
ventricular system of central nervous system | 5.58e-07 | 2 |