FFCP PHASE1:Hg19::chr2:43300759..43300780,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:43300759..43300780,+ | |||
|description=CAGE_peak_at_chr2:43300759..43300780,+ | |description=CAGE_peak_at_chr2:43300759..43300780,+ | ||
|id=chr2:43300759..43300780,+ | |id=chr2:43300759..43300780,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.34e-18!43;CL:0002368!3.19e-12!13;CL:0000066!3.81e-12!254;CL:0000223!5.70e-11!59;CL:0002251!7.08e-10!21;CL:0002159!5.05e-08!13;CL:0000622!5.57e-08!5;CL:0002202!1.05e-07!9;CL:0002632!1.05e-07!9;CL:0000244!5.96e-07!4;CL:0000731!5.96e-07!4 | |ontology_enrichment_celltype=CL:0002076!2.34e-18!43;CL:0002368!3.19e-12!13;CL:0000066!3.81e-12!254;CL:0000223!5.70e-11!59;CL:0002251!7.08e-10!21;CL:0002159!5.05e-08!13;CL:0000622!5.57e-08!5;CL:0002202!1.05e-07!9;CL:0002632!1.05e-07!9;CL:0000244!5.96e-07!4;CL:0000731!5.96e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.83e-20;19!CL:0002368;1.28e-18;13!CL:0000244;1.85e-16;4!CL:0000731;1.85e-16;4!CL:0002202;1.26e-15;9!CL:0002632;1.26e-15;9!CL:0002577;1.64e-13;3!CL:0000622;3.45e-13;5!CL:0002328;8.07e-13;3!CL:0002159;1.09e-12;14!CL:0000307;1.11e-12;3!CL:0002076;1.64e-11;42!CL:0000154;5.29e-11;6!CL:0000362;1.02e-10;9!CL:0002536;7.51e-10;2!CL:0000317;8.15e-09;2!CL:1000448;8.15e-09;2!CL:0002308;8.15e-09;2!CL:0002140;8.15e-09;2!CL:0000575;1.53e-08;2!CL:0002537;4.44e-08;5!CL:0000312;1.28e-07;5!CL:0000150;2.39e-07;9 | |ontology_enrichment_celltype_v019=CL:0000349;1.83e-20;19!CL:0002368;1.28e-18;13!CL:0000244;1.85e-16;4!CL:0000731;1.85e-16;4!CL:0002202;1.26e-15;9!CL:0002632;1.26e-15;9!CL:0002577;1.64e-13;3!CL:0000622;3.45e-13;5!CL:0002328;8.07e-13;3!CL:0002159;1.09e-12;14!CL:0000307;1.11e-12;3!CL:0002076;1.64e-11;42!CL:0000154;5.29e-11;6!CL:0000362;1.02e-10;9!CL:0002536;7.51e-10;2!CL:0000317;8.15e-09;2!CL:1000448;8.15e-09;2!CL:0002308;8.15e-09;2!CL:0002140;8.15e-09;2!CL:0000575;1.53e-08;2!CL:0002537;4.44e-08;5!CL:0000312;1.28e-07;5!CL:0000150;2.39e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.43e-20,19;CL:0000066,8.37e-19,253;CL:0002368,1.67e-18,13;CL:0000244,1.78e-16,4;CL:0000731,1.78e-16,4;CL:0002202,1.59e-15,9;CL:0002632,1.59e-15,9;CL:0002076,2.36e-15,42;CL:0002577,1.42e-13,3;CL:0000622,4.18e-13,5;CL:0002328,6.23e-13,3;CL:0002159,9.86e-13,14;CL:0000068,2.07e-12,3;CL:0000069,2.07e-12,3;CL:0000307,2.07e-12,3;CL:0000377,2.07e-12,3;CL:0000154,6.20e-11,6;CL:0000362,1.17e-10,9;CL:0000223,2.91e-10,58;CL:0002536,7.53e-10,2;CL:0000076,4.65e-09,63;CL:0000575,9.57e-09,2;CL:0000317,9.95e-09,2;CL:1000448,9.95e-09,2;CL:0002308,9.95e-09,2;CL:0002140,9.95e-09,2;CL:0002537,3.90e-08,5;CL:0000312,1.33e-07,5;CL:0000150,2.65e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;1.11e-12;3 | |ontology_enrichment_development_v019=CL:0000377;1.11e-12;3 | ||
|ontology_enrichment_disease=DOID:1749!4.04e-09!14 | |ontology_enrichment_disease=DOID:1749!4.04e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.34e-13;14 | |ontology_enrichment_disease_v019=DOID:1749;5.34e-13;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,5.30e-13,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.07e-14!14;UBERON:0000158!2.07e-14!14;UBERON:0004119!1.91e-12!169;UBERON:0000925!1.91e-12!169;UBERON:0006595!1.91e-12!169;UBERON:0003124!2.04e-10!7;UBERON:0003102!1.05e-09!95;UBERON:0001004!1.91e-09!72;UBERON:0000161!3.23e-08!35;UBERON:0000166!4.17e-08!21;UBERON:0000365!1.86e-07!5;UBERON:0004923!2.05e-07!57;UBERON:0000165!3.41e-07!28;UBERON:0000930!3.41e-07!28;UBERON:0001987!6.51e-07!4;UBERON:0004340!6.51e-07!4;UBERON:0000478!6.90e-07!24 | |ontology_enrichment_uberon=UBERON:0005631!2.07e-14!14;UBERON:0000158!2.07e-14!14;UBERON:0004119!1.91e-12!169;UBERON:0000925!1.91e-12!169;UBERON:0006595!1.91e-12!169;UBERON:0003124!2.04e-10!7;UBERON:0003102!1.05e-09!95;UBERON:0001004!1.91e-09!72;UBERON:0000161!3.23e-08!35;UBERON:0000166!4.17e-08!21;UBERON:0000365!1.86e-07!5;UBERON:0004923!2.05e-07!57;UBERON:0000165!3.41e-07!28;UBERON:0000930!3.41e-07!28;UBERON:0001987!6.51e-07!4;UBERON:0004340!6.51e-07!4;UBERON:0000478!6.90e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.58e-20;10!UBERON:0000158;5.58e-20;10!UBERON:0000478;9.16e-16;24!UBERON:0000305;4.02e-15;7!UBERON:0000365;3.45e-13;5!UBERON:0004815;8.07e-13;3!UBERON:0002031;8.07e-13;3!UBERON:0000486;2.50e-11;12!UBERON:0005910;5.29e-11;6!UBERON:0001987;3.07e-10;4!UBERON:0005911;1.84e-09;36!UBERON:0007196;4.07e-09;15!UBERON:0001558;4.07e-09;15!UBERON:0002419;8.15e-09;2!UBERON:0007771;8.15e-09;2!UBERON:0003297;8.15e-09;2!UBERON:0001821;8.15e-09;2!UBERON:0003487;8.15e-09;2!UBERON:0001820;8.15e-09;2!UBERON:0004807;4.54e-08;22!UBERON:0002185;7.31e-08;5!UBERON:0005178;7.89e-08;34!UBERON:0002224;7.89e-08;34!UBERON:0005181;2.93e-07;35 | |ontology_enrichment_uberon_v019=UBERON:0005631;5.58e-20;10!UBERON:0000158;5.58e-20;10!UBERON:0000478;9.16e-16;24!UBERON:0000305;4.02e-15;7!UBERON:0000365;3.45e-13;5!UBERON:0004815;8.07e-13;3!UBERON:0002031;8.07e-13;3!UBERON:0000486;2.50e-11;12!UBERON:0005910;5.29e-11;6!UBERON:0001987;3.07e-10;4!UBERON:0005911;1.84e-09;36!UBERON:0007196;4.07e-09;15!UBERON:0001558;4.07e-09;15!UBERON:0002419;8.15e-09;2!UBERON:0007771;8.15e-09;2!UBERON:0003297;8.15e-09;2!UBERON:0001821;8.15e-09;2!UBERON:0003487;8.15e-09;2!UBERON:0001820;8.15e-09;2!UBERON:0004807;4.54e-08;22!UBERON:0002185;7.31e-08;5!UBERON:0005178;7.89e-08;34!UBERON:0002224;7.89e-08;34!UBERON:0005181;2.93e-07;35 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.14e-28,14;UBERON:0000158,1.14e-28,14;UBERON:0000478,7.57e-16,24;UBERON:0000305,3.44e-15,7;UBERON:0003124,3.87e-15,7;UBERON:0004871,3.00e-13,8;UBERON:0000365,3.35e-13,5;UBERON:0004815,6.23e-13,3;UBERON:0002031,6.23e-13,3;UBERON:0005910,5.16e-11,6;UBERON:0001987,2.76e-10,4;UBERON:0004340,2.76e-10,4;UBERON:0007196,4.67e-09,15;UBERON:0001558,4.67e-09,15;UBERON:0001004,9.76e-09,74;UBERON:0002419,9.95e-09,2;UBERON:0007771,9.95e-09,2;UBERON:0003297,9.95e-09,2;UBERON:0001821,9.95e-09,2;UBERON:0003487,9.95e-09,2;UBERON:0001820,9.95e-09,2;UBERON:0005089,9.95e-09,2;UBERON:0005088,9.95e-09,2;UBERON:0004119,1.42e-08,160;UBERON:0000925,1.42e-08,160;UBERON:0006595,1.42e-08,160;UBERON:0005178,4.82e-08,34;UBERON:0002224,4.82e-08,34;UBERON:0002185,6.28e-08,5;UBERON:0005181,9.09e-08,35;UBERON:0004923,9.72e-08,66;UBERON:0000915,3.49e-07,52 | |||
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| ||
|short_description=p@chr2:43300759..43300780,+ | |short_description=p@chr2:43300759..43300780,+ | ||
}} | }} |
Latest revision as of 10:13, 29 July 2015
Short description: | p@chr2:43300759..43300780, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:43300759..43300780, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.43e-20 | 19 |
epithelial cell | 8.37e-19 | 253 |
respiratory epithelial cell | 1.67e-18 | 13 |
transitional epithelial cell | 1.78e-16 | 4 |
urothelial cell | 1.78e-16 | 4 |
epithelial cell of tracheobronchial tree | 1.59e-15 | 9 |
epithelial cell of lower respiratory tract | 1.59e-15 | 9 |
endo-epithelial cell | 2.36e-15 | 42 |
placental epithelial cell | 1.42e-13 | 3 |
acinar cell | 4.18e-13 | 5 |
bronchial epithelial cell | 6.23e-13 | 3 |
general ecto-epithelial cell | 9.86e-13 | 14 |
duct epithelial cell | 2.07e-12 | 3 |
branched duct epithelial cell | 2.07e-12 | 3 |
tracheal epithelial cell | 2.07e-12 | 3 |
tracheoblast | 2.07e-12 | 3 |
protein secreting cell | 6.20e-11 | 6 |
epidermal cell | 1.17e-10 | 9 |
endodermal cell | 2.91e-10 | 58 |
amniotic epithelial cell | 7.53e-10 | 2 |
squamous epithelial cell | 4.65e-09 | 63 |
corneal epithelial cell | 9.57e-09 | 2 |
sebum secreting cell | 9.95e-09 | 2 |
epithelial cell of sweat gland | 9.95e-09 | 2 |
epithelial cell of skin gland | 9.95e-09 | 2 |
acinar cell of sebaceous gland | 9.95e-09 | 2 |
amnion mesenchymal stem cell | 3.90e-08 | 5 |
keratinocyte | 1.33e-07 | 5 |
glandular epithelial cell | 2.65e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.14e-28 | 14 |
membranous layer | 1.14e-28 | 14 |
extraembryonic structure | 7.57e-16 | 24 |
amnion | 3.44e-15 | 7 |
chorion | 3.87e-15 | 7 |
somatic layer of lateral plate mesoderm | 3.00e-13 | 8 |
urothelium | 3.35e-13 | 5 |
lower respiratory tract epithelium | 6.23e-13 | 3 |
epithelium of bronchus | 6.23e-13 | 3 |
transitional epithelium | 5.16e-11 | 6 |
placenta | 2.76e-10 | 4 |
allantois | 2.76e-10 | 4 |
tracheobronchial tree | 4.67e-09 | 15 |
lower respiratory tract | 4.67e-09 | 15 |
respiratory system | 9.76e-09 | 74 |
skin gland | 9.95e-09 | 2 |
epidermis gland | 9.95e-09 | 2 |
gland of integumental system | 9.95e-09 | 2 |
sebaceous gland | 9.95e-09 | 2 |
skin sebaceous gland | 9.95e-09 | 2 |
sweat gland | 9.95e-09 | 2 |
sweat gland placode | 9.95e-09 | 2 |
sebaceous gland placode | 9.95e-09 | 2 |
endoderm-derived structure | 1.42e-08 | 160 |
endoderm | 1.42e-08 | 160 |
presumptive endoderm | 1.42e-08 | 160 |
thoracic cavity element | 4.82e-08 | 34 |
thoracic cavity | 4.82e-08 | 34 |
bronchus | 6.28e-08 | 5 |
thoracic segment organ | 9.09e-08 | 35 |
organ component layer | 9.72e-08 | 66 |
thoracic segment of trunk | 3.49e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.30e-13 | 14 |