FFCP PHASE1:Hg19::chr3:149096538..149096558,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:149096538..149096558,- | |||
|description=CAGE_peak_at_chr3:149096538..149096558,- | |description=CAGE_peak_at_chr3:149096538..149096558,- | ||
|id=chr3:149096538..149096558,- | |id=chr3:149096538..149096558,- | ||
|ontology_enrichment_celltype=CL:0000066!4.02e-30!254;CL:0000082!1.51e-09!19;CL:0002150!1.53e-09!3;CL:0000861!1.53e-09!3;CL:0000223!4.02e-09!59 | |ontology_enrichment_celltype=CL:0000066!4.02e-30!254;CL:0000082!1.51e-09!19;CL:0002150!1.53e-09!3;CL:0000861!1.53e-09!3;CL:0000223!4.02e-09!59 | ||
|ontology_enrichment_celltype_v019=CL:0000082;7.34e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.02e-08,253;CL:0000082,7.80e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.36e-16;29 | |||
|ontology_enrichment_disease=DOID:305!4.92e-57!106;DOID:0050687!2.67e-40!143;DOID:14566!4.86e-28!239;DOID:162!1.40e-26!235;DOID:0050615!1.18e-14!16;DOID:1324!1.34e-12!15;DOID:299!4.25e-10!25;DOID:7!2.29e-09!39;DOID:3908!1.81e-08!5;DOID:1749!2.48e-07!14;DOID:170!4.06e-07!6;DOID:3905!5.12e-07!9 | |||
|ontology_enrichment_disease_v019=DOID:0050619;1.72e-14;1!DOID:1357;1.72e-14;1!DOID:0050615;1.62e-13;16!DOID:3908;1.24e-11;5!DOID:299;1.10e-08;25!DOID:1324;1.48e-08;15!DOID:3910;4.37e-08;2!DOID:4468;6.80e-08;2!DOID:305;7.41e-07;106!DOID:3905;7.53e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.51e-23,106;DOID:0050687,1.16e-16,143;DOID:0050619,9.36e-15,1;DOID:1357,9.36e-15,1;DOID:0050615,1.54e-13,16;DOID:3908,1.58e-11,5;DOID:162,4.21e-11,235;DOID:14566,7.75e-11,239;DOID:299,9.33e-09,25;DOID:1324,1.60e-08,15;DOID:3910,4.38e-08,2;DOID:4468,5.37e-08,2;DOID:3905,8.59e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000077!6.31e-20!130;UBERON:0004921!9.08e-19!129;UBERON:0004185!9.08e-19!129;UBERON:0001737!2.53e-18!9;UBERON:0001007!3.58e-18!155;UBERON:0001555!3.58e-18!155;UBERON:0007026!3.58e-18!155;UBERON:0001041!8.48e-18!98;UBERON:0008947!8.74e-18!38;UBERON:0003258!8.74e-18!38;UBERON:0004119!9.28e-18!169;UBERON:0000925!9.28e-18!169;UBERON:0006595!9.28e-18!169;UBERON:0000072!3.84e-17!46;UBERON:0000065!1.05e-15!53;UBERON:0001004!4.15e-14!72;UBERON:0005911!2.43e-13!82;UBERON:0001557!9.96e-12!19;UBERON:0003104!1.23e-11!238;UBERON:0009142!1.23e-11!238;UBERON:0005153!5.00e-10!37;UBERON:0005177!8.54e-10!107;UBERON:0004802!1.51e-09!19;UBERON:0000115!1.51e-09!19;UBERON:0005157!1.03e-08!51;UBERON:0002294!1.23e-08!7;UBERON:0001173!1.23e-08!7;UBERON:0004912!1.23e-08!7;UBERON:0001048!1.70e-08!168;UBERON:0000466!3.57e-08!126;UBERON:0002048!5.37e-08!22;UBERON:0000117!5.37e-08!22;UBERON:0000171!5.37e-08!22;UBERON:0000170!5.37e-08!22;UBERON:0005597!5.37e-08!22;UBERON:0000118!5.37e-08!22;UBERON:0000063!7.66e-08!97;UBERON:0009569!2.18e-07!113;UBERON:0004807!2.80e-07!28;UBERON:0000481!8.61e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;1.72e-14;1!UBERON:0001825;1.72e-14;1!UBERON:0001737;9.36e-14;9!UBERON:0001557;9.36e-14;9!UBERON:0000072;4.82e-10;37!UBERON:0004903;4.37e-08;2!UBERON:0002173;4.37e-08;2!UBERON:0002186;4.37e-08;2!UBERON:0004802;7.34e-07;19!UBERON:0000115;7.34e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,9.36e-15,1;UBERON:0001825,9.36e-15,1;UBERON:0001737,1.24e-13,9;UBERON:0008947,3.93e-12,38;UBERON:0003258,3.93e-12,38;UBERON:0001004,1.21e-10,74;UBERON:0000072,9.43e-10,47;UBERON:0000065,1.91e-08,54;UBERON:0004903,4.38e-08,2;UBERON:0002173,4.38e-08,2;UBERON:0002186,4.38e-08,2;UBERON:0004802,7.80e-07,19;UBERON:0000115,7.80e-07,19;UBERON:0001557,9.54e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.591534000199219,0.842923450390509,0.723033089650446,0.441175890929576,1.08939722046203,1.18635309555548,1.07865046528132,0.784885860501384,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961416640147258,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0,0,0,0.629078458031288,0.179021174675609,0,0,0,0,0,0,0,1.30213880542617,0.874599999961957,0,0.1137934482855,2.79679015322043,0.472775363535873,0,0,0,0,0,0,0,0,0,0.544692317594951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971121518136371,0,0,0,0,0,0,0,0.330991955875499,0,0,1.42304773014896,0,0,0.0979923974143777,0.0870592065804026,0,0,3.38647159511798,3.28901926887835,2.87404099686232,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0.19980960958213,0,0,0,1.1524383839052,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.412079291905832,0.404421263125109,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,1.07572403599707,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0.684347351537318,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,1.88464915500281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0.345430341731199,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35939446695481,0,0.115525666150338,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0.222462803784138,0.078493092850514,0,0.560544326627578,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0.68732060563215,0,0,0,0.196300467230486,0.121917924982269,0,0,0,0,0,0,0,0.79062257427272,0,0,0,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0,0,0.401206833445841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0.162806537221949,0.213454691755431,0,0.269475606319761,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.591534000199219,0.842923450390509,0.723033089650446,0.441175890929576,1.08939722046203,1.18635309555548,1.07865046528132,0.784885860501384,0,0,0,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961416640147258,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0,0,0,0.629078458031288,0.179021174675609,0,0,0,0,0,0,0,1.30213880542617,0.874599999961957,0,0.1137934482855,2.79679015322043,0.472775363535873,0,0,0,0,0,0,0,0,0,0.544692317594951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971121518136371,0,0,0,0,0,0,0,0.330991955875499,0,0,1.42304773014896,0,0,0.0979923974143777,0.0870592065804026,0,0,3.38647159511798,3.28901926887835,2.87404099686232,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0.19980960958213,0,0,0,1.1524383839052,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.412079291905832,0.404421263125109,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,1.07572403599707,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0.684347351537318,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,1.88464915500281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0.345430341731199,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35939446695481,0,0.115525666150338,0,0,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0.222462803784138,0.078493092850514,0,0.560544326627578,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0.68732060563215,0,0,0,0.196300467230486,0.121917924982269,0,0,0,0,0,0,0,0.79062257427272,0,0,0,0,0,0,0.471353094203252,0,0,0,0,0,0,0,0,0,0.401206833445841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0.162806537221949,0.213454691755431,0,0.269475606319761,0,0,0,0,0,0 | ||
|short_description=p@chr3:149096538..149096558,- | |short_description=p@chr3:149096538..149096558,- | ||
}} | }} |
Latest revision as of 16:52, 29 July 2015
Short description: | p@chr3:149096538..149096558, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:149096538..149096558, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.02e-08 | 253 |
epithelial cell of lung | 7.80e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 9.36e-15 | 1 |
paranasal sinus | 9.36e-15 | 1 |
larynx | 1.24e-13 | 9 |
respiratory primordium | 3.93e-12 | 38 |
endoderm of foregut | 3.93e-12 | 38 |
respiratory system | 1.21e-10 | 74 |
segment of respiratory tract | 9.43e-10 | 47 |
respiratory tract | 1.91e-08 | 54 |
bronchoalveolar duct junction | 4.38e-08 | 2 |
alveolar duct | 4.38e-08 | 2 |
bronchiole | 4.38e-08 | 2 |
respiratory tract epithelium | 7.80e-07 | 19 |
lung epithelium | 7.80e-07 | 19 |
upper respiratory tract | 9.54e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.51e-23 | 106 |
cell type cancer | 1.16e-16 | 143 |
paranasal sinus cancer | 9.36e-15 | 1 |
maxillary sinus cancer | 9.36e-15 | 1 |
respiratory system cancer | 1.54e-13 | 16 |
non-small cell lung carcinoma | 1.58e-11 | 5 |
cancer | 4.21e-11 | 235 |
disease of cellular proliferation | 7.75e-11 | 239 |
adenocarcinoma | 9.33e-09 | 25 |
lung cancer | 1.60e-08 | 15 |
lung adenocarcinoma | 4.38e-08 | 2 |
clear cell adenocarcinoma | 5.37e-08 | 2 |
lung carcinoma | 8.59e-07 | 9 |