FFCP PHASE1:Hg19::chr3:25894063..25894094,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:25894063..25894094,+ | |||
|coexpression_cluster_id=C391 | |||
|description=CAGE_peak_at_chr3:25894063..25894094,+ | |description=CAGE_peak_at_chr3:25894063..25894094,+ | ||
|id=chr3:25894063..25894094,+ | |id=chr3:25894063..25894094,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.44e-17!18;CL:0000789!1.44e-17!18;CL:0002420!1.44e-17!18;CL:0002419!1.44e-17!18;CL:0000790!1.44e-17!18;CL:0000084!4.08e-15!25;CL:0000827!4.08e-15!25;CL:0000784!3.55e-14!3;CL:0000624!1.55e-11!6;CL:0000625!1.61e-09!11;CL:0000838!1.38e-07!52;CL:0000542!2.10e-07!53;CL:0000051!2.10e-07!53;CL:0000738!3.45e-07!140 | |ontology_enrichment_celltype=CL:0000791!1.44e-17!18;CL:0000789!1.44e-17!18;CL:0002420!1.44e-17!18;CL:0002419!1.44e-17!18;CL:0000790!1.44e-17!18;CL:0000084!4.08e-15!25;CL:0000827!4.08e-15!25;CL:0000784!3.55e-14!3;CL:0000624!1.55e-11!6;CL:0000625!1.61e-09!11;CL:0000838!1.38e-07!52;CL:0000542!2.10e-07!53;CL:0000051!2.10e-07!53;CL:0000738!3.45e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000784;3.19e-38;3!CL:0000451;3.14e-11;10!CL:0000322;9.43e-11;3!CL:0000082;5.75e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,3.86e-38,3;CL:0000451,3.30e-11,10;CL:0000322,8.99e-11,3;CL:0000082,5.66e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.12e-12;10!UBERON:0005564;2.12e-12;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3908;1.08e-23;5!DOID:3910;1.91e-15;2!DOID:3905;1.19e-13;9!DOID:4556;6.73e-11;3!DOID:1324;1.39e-08;15!DOID:0050615;4.19e-08;16 | |||
|ontology_enrichment_disease_v019_2=DOID:3908,1.02e-23,5;DOID:3910,1.78e-15,2;DOID:3905,1.15e-13,9;DOID:4556,6.73e-11,3;DOID:1324,1.37e-08,15;DOID:0050615,4.11e-08,16 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.91e-15;2!UBERON:0002173;1.91e-15;2!UBERON:0002186;1.91e-15;2!UBERON:0000473;3.06e-15;8!UBERON:0003135;2.30e-11;11!UBERON:0004821;9.43e-11;3!UBERON:0007499;9.43e-11;3!UBERON:0003215;9.43e-11;3!UBERON:0010368;9.43e-11;3!UBERON:0009911;9.43e-11;3!UBERON:0002299;9.43e-11;3!UBERON:0006524;9.43e-11;3!UBERON:0008874;9.43e-11;3!UBERON:0002169;9.43e-11;3!UBERON:0004894;9.43e-11;3!UBERON:0009856;2.18e-08;4!UBERON:0004802;5.75e-07;19!UBERON:0000115;5.75e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,1.78e-15,2;UBERON:0002173,1.78e-15,2;UBERON:0002186,1.78e-15,2;UBERON:0000473,3.06e-15,8;UBERON:0003135,2.30e-11,11;UBERON:0004821,8.99e-11,3;UBERON:0003215,8.99e-11,3;UBERON:0010368,8.99e-11,3;UBERON:0009911,8.99e-11,3;UBERON:0002299,8.99e-11,3;UBERON:0006524,8.99e-11,3;UBERON:0008874,8.99e-11,3;UBERON:0002169,8.99e-11,3;UBERON:0004894,8.99e-11,3;UBERON:0004802,5.66e-07,19;UBERON:0000115,5.66e-07,19 | |||
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| ||
|short_description=p@chr3:25894063..25894094,+ | |short_description=p@chr3:25894063..25894094,+ | ||
}} | }} |
Latest revision as of 20:15, 29 July 2015
Short description: | p@chr3:25894063..25894094, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:25894063..25894094, + |
Coexpression cluster: | C391_large_bronchioalveolar_fibrosarcoma_lung_pancreatic_giant_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 3.86e-38 | 3 |
dendritic cell | 3.30e-11 | 10 |
pneumocyte | 8.99e-11 | 3 |
epithelial cell of lung | 5.66e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 1.78e-15 | 2 |
alveolar duct | 1.78e-15 | 2 |
bronchiole | 1.78e-15 | 2 |
testis | 3.06e-15 | 8 |
male reproductive organ | 2.30e-11 | 11 |
pulmonary alveolus epithelium | 8.99e-11 | 3 |
alveolus | 8.99e-11 | 3 |
pulmonary lobule | 8.99e-11 | 3 |
lobule | 8.99e-11 | 3 |
alveolus of lung | 8.99e-11 | 3 |
alveolar system | 8.99e-11 | 3 |
pulmonary acinus | 8.99e-11 | 3 |
alveolar sac | 8.99e-11 | 3 |
alveolar wall | 8.99e-11 | 3 |
respiratory tract epithelium | 5.66e-07 | 19 |
lung epithelium | 5.66e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 1.02e-23 | 5 |
lung adenocarcinoma | 1.78e-15 | 2 |
lung carcinoma | 1.15e-13 | 9 |
lung large cell carcinoma | 6.73e-11 | 3 |
lung cancer | 1.37e-08 | 15 |
respiratory system cancer | 4.11e-08 | 16 |