FFCP PHASE1:Hg19::chr3:58751195..58751198,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:58751195..58751198,- | |||
|description=CAGE_peak_at_chr3:58751195..58751198,- | |description=CAGE_peak_at_chr3:58751195..58751198,- | ||
|id=chr3:58751195..58751198,- | |id=chr3:58751195..58751198,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000322;9.43e-11;3!CL:0000083;2.18e-08;4!CL:0000082;6.38e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.20e-10,3;CL:0000083,2.43e-08,4;CL:0000082,6.38e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.27e-16!143;DOID:14566!1.10e-15!239;DOID:305!2.68e-15!106;DOID:162!5.94e-15!235;DOID:1749!1.82e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1799;2.05e-29;1!DOID:10165;2.05e-29;1!DOID:1798;2.05e-29;1!DOID:1325;4.02e-17;7!DOID:3904;4.02e-17;7!DOID:3910;1.91e-15;2!DOID:3905;1.49e-13;9!DOID:1324;1.59e-08;15!DOID:1793;2.18e-08;4!DOID:5409;2.18e-08;4!DOID:0050615;4.74e-08;16!DOID:305;3.91e-07;106!DOID:3908;5.86e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.16e-29,1;DOID:10165,3.16e-29,1;DOID:1798,3.16e-29,1;DOID:1325,4.02e-17,7;DOID:3904,4.02e-17,7;DOID:3910,2.74e-15,2;DOID:3905,1.49e-13,9;DOID:1324,1.59e-08,15;DOID:5409,1.82e-08,4;DOID:1793,2.43e-08,4;DOID:0050615,4.74e-08,16;DOID:0050687,2.45e-07,143;DOID:305,5.56e-07,106;DOID:3908,6.77e-07,5 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;1.91e-15;2!UBERON:0002173;1.91e-15;2!UBERON:0002186;1.91e-15;2!UBERON:0004821;9.43e-11;3!UBERON:0007499;9.43e-11;3!UBERON:0003215;9.43e-11;3!UBERON:0010368;9.43e-11;3!UBERON:0009911;9.43e-11;3!UBERON:0002299;9.43e-11;3!UBERON:0006524;9.43e-11;3!UBERON:0008874;9.43e-11;3!UBERON:0002169;9.43e-11;3!UBERON:0004894;9.43e-11;3!UBERON:0009856;2.18e-08;4!UBERON:0004802;6.38e-07;19!UBERON:0000115;6.38e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,2.74e-15,2;UBERON:0002173,2.74e-15,2;UBERON:0002186,2.74e-15,2;UBERON:0004821,1.20e-10,3;UBERON:0003215,1.20e-10,3;UBERON:0010368,1.20e-10,3;UBERON:0009911,1.20e-10,3;UBERON:0002299,1.20e-10,3;UBERON:0006524,1.20e-10,3;UBERON:0008874,1.20e-10,3;UBERON:0002169,1.20e-10,3;UBERON:0004894,1.20e-10,3;UBERON:0004802,6.38e-07,19;UBERON:0000115,6.38e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,0,0.164201178899891,0,0,0,0,0,0,0.369754010166788,0.154934401160603,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0.609868530647977,0.132529768321485,0.232387885739037,0.310983165046111,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0.54907405947211,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0.318852545457645,0,0.191505370132367,0.211673582723883,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0.19538809540204,0.278406173895242,0,0,0,0,0,0,0.121360521749513,0.557216921387392,0,0,0,0,0,0.140669416410513,0,0,0.422250816255987,0,0,0.251932747854276,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0.1137934482855,1.01701460117107,0,0.344743373241465,0.583209226766509,0.520874984799877,0,0.120596438625408,0,0,0,0,0,0,0,0,0.46112780877612,0,0,0,0,0.533034776018635,0,0,0,0,0,0.335643173951685,0.75901493089674,0,0.421996129056054,0,0,0,0,0,0,0.593042257361244,0.247127877893006,0.104421949505455,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0.160317640503067,0,0.39961921916426,0.576361668616424,0,0.686379991447858,0.14405479798815,0,0,0,0,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.679872549120754,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0.592834895693833,0,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.491545817507439,0.211312123358627,0,0.320075189082423,0.344429959321631,0,0.368211900503681,0,0,0,0,0,0.109209638192014,0,0,0.371807292777007,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0,0.161475645631851,0,0.687034029507179,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,1.04762677792569,0,0,0,0,0,0.0634158101939068,0.546974809018219,0,0,0,0,0,0,0,0.227662191351298,0,0,0.171488009437418,0,0,0.118193840883968,0.444925607568277,0,0,0,0.913158720509496,0,0,0,0,1.3948971044175,0.173858272302579,0,0,0,0,0,0.709992004383392,0.596493833314104,0,0,0,0,0.111855431797792,0.294450700845729,0.243835849964539,0,0,0,0,0,2.38740930193642,0.118920090777569,1.80713731262336,0,0,0,0,0,0,0.235676547101626,0,0,0,0,0,0,0.499705779624645,0.357107877211315,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0.157771562193185,0,0.436350690340377,0,0,0,0,0.504665699340316,0.655593431782173,1.14028650910293,0.305966489225945,0.26721740526556,0.0918948995348449,0.250707539292375,0.151557396436479,1.33982065078089,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0.106727345877715,0,0.0898252021065869,0,0,0.813792356631477,0,0,0 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| ||
|short_description=p@chr3:58751195..58751198,- | |short_description=p@chr3:58751195..58751198,- | ||
}} | }} |
Latest revision as of 23:00, 29 July 2015
Short description: | p@chr3:58751195..58751198, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:58751195..58751198, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.20e-10 | 3 |
epithelial cell of pancreas | 2.43e-08 | 4 |
epithelial cell of lung | 6.38e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 2.74e-15 | 2 |
alveolar duct | 2.74e-15 | 2 |
bronchiole | 2.74e-15 | 2 |
pulmonary alveolus epithelium | 1.20e-10 | 3 |
alveolus | 1.20e-10 | 3 |
pulmonary lobule | 1.20e-10 | 3 |
lobule | 1.20e-10 | 3 |
alveolus of lung | 1.20e-10 | 3 |
alveolar system | 1.20e-10 | 3 |
pulmonary acinus | 1.20e-10 | 3 |
alveolar sac | 1.20e-10 | 3 |
alveolar wall | 1.20e-10 | 3 |
respiratory tract epithelium | 6.38e-07 | 19 |
lung epithelium | 6.38e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.16e-29 | 1 |
endocrine pancreas cancer | 3.16e-29 | 1 |
pancreatic endocrine carcinoma | 3.16e-29 | 1 |
bronchus cancer | 4.02e-17 | 7 |
bronchogenic carcinoma | 4.02e-17 | 7 |
lung adenocarcinoma | 2.74e-15 | 2 |
lung carcinoma | 1.49e-13 | 9 |
lung cancer | 1.59e-08 | 15 |
lung small cell carcinoma | 1.82e-08 | 4 |
pancreatic cancer | 2.43e-08 | 4 |
respiratory system cancer | 4.74e-08 | 16 |
cell type cancer | 2.45e-07 | 143 |
carcinoma | 5.56e-07 | 106 |
non-small cell lung carcinoma | 6.77e-07 | 5 |