FFCP PHASE1:Hg19::chr4:140684228..140684239,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:140684228..140684239,+ | |||
|description=CAGE_peak_at_chr4:140684228..140684239,+ | |description=CAGE_peak_at_chr4:140684228..140684239,+ | ||
|id=chr4:140684228..140684239,+ | |id=chr4:140684228..140684239,+ | ||
|ontology_enrichment_celltype=CL:0002139!3.16e-33!24;CL:0000115!1.44e-26!35;CL:0000071!5.35e-23!18;CL:0002546!5.35e-23!18;CL:0002078!6.09e-20!44;CL:1000413!2.27e-14!9;CL:0000213!4.12e-14!57;CL:0000215!4.12e-14!57;CL:0005020!5.57e-12!6;CL:0002138!5.57e-12!6;CL:0005022!5.57e-12!6;CL:0002544!9.66e-12!6;CL:0002618!9.83e-09!3;CL:0002543!3.93e-07!6;CL:0002545!9.52e-07!2 | |ontology_enrichment_celltype=CL:0002139!3.16e-33!24;CL:0000115!1.44e-26!35;CL:0000071!5.35e-23!18;CL:0002546!5.35e-23!18;CL:0002078!6.09e-20!44;CL:1000413!2.27e-14!9;CL:0000213!4.12e-14!57;CL:0000215!4.12e-14!57;CL:0005020!5.57e-12!6;CL:0002138!5.57e-12!6;CL:0005022!5.57e-12!6;CL:0002544!9.66e-12!6;CL:0002618!9.83e-09!3;CL:0002543!3.93e-07!6;CL:0002545!9.52e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002139;4.80e-41;24!CL:0002138;2.51e-33;6!CL:0000115;9.60e-27;36!CL:0002078;6.89e-20;45!CL:0002144;4.44e-18;3!CL:0000071;1.90e-17;18!CL:0000213;2.44e-12;58!CL:0000215;2.44e-12;58!CL:0002544;2.72e-09;6!CL:0002545;1.16e-07;2!CL:0002262;1.75e-07;2!CL:1000398;1.75e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.72e-41,24;CL:0005020,1.24e-33,6;CL:0002138,1.24e-33,6;CL:0005022,1.24e-33,6;CL:0000115,1.53e-33,36;CL:0002078,1.27e-26,45;CL:0000213,2.08e-20,58;CL:0000215,2.08e-20,58;CL:0002144,4.64e-18,3;CL:0000071,2.11e-17,18;CL:0002546,2.11e-17,18;CL:0002544,3.02e-09,6;CL:0000222,3.73e-09,121;CL:0002545,1.12e-07,2;CL:0002262,1.36e-07,2;CL:1000398,1.36e-07,2 | |||
|ontology_enrichment_development_v019=CL:0005022;2.51e-33;6!CL:0002546;1.90e-17;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.22e-25!115;UBERON:0001986!5.35e-23!18;UBERON:0004638!5.35e-23!18;UBERON:0004852!5.35e-23!18;UBERON:0000487!3.45e-18!22;UBERON:0006914!1.34e-15!25;UBERON:0003915!2.27e-14!9;UBERON:0004700!2.27e-14!9;UBERON:0001917!2.27e-14!9;UBERON:0000055!1.85e-13!69;UBERON:0001009!3.34e-11!113;UBERON:0002049!5.24e-11!79;UBERON:0007798!5.24e-11!79;UBERON:0004111!4.42e-10!241;UBERON:0004872!8.64e-10!84;UBERON:0000477!2.83e-09!286;UBERON:0000025!4.04e-09!194;UBERON:0001473!7.42e-09!8;UBERON:0004536!7.42e-09!8;UBERON:0006558!7.42e-09!8;UBERON:0001981!7.60e-09!60;UBERON:0007500!7.60e-09!60;UBERON:0004537!7.60e-09!60;UBERON:0006965!7.60e-09!60;UBERON:0004535!7.70e-09!110;UBERON:0001638!4.04e-07!9;UBERON:0003920!4.04e-07!9;UBERON:0004582!4.04e-07!9;UBERON:0002465!5.57e-07!10;UBERON:0005800!9.52e-07!2;UBERON:0001515!9.52e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;4.20e-25;8!UBERON:0004536;4.20e-25;8!UBERON:0006558;4.20e-25;8!UBERON:0002465;3.69e-20;10!UBERON:0010523;4.44e-18;3!UBERON:0001915;4.44e-18;3!UBERON:0001982;4.44e-18;3!UBERON:0004638;1.90e-17;18!UBERON:0001986;1.90e-17;18!UBERON:0004852;1.90e-17;18!UBERON:0000487;2.83e-14;22!UBERON:0007029;1.10e-13;1!UBERON:0002146;1.10e-13;1!UBERON:0005623;1.10e-13;1!UBERON:0006914;1.47e-12;25!UBERON:0002405;1.83e-11;27!UBERON:0000055;1.20e-09;65!UBERON:0000490;2.10e-09;33!UBERON:0004535;7.57e-08;109!UBERON:0005800;1.16e-07;2!UBERON:0001515;1.16e-07;2!UBERON:0001281;1.75e-07;2!UBERON:0003497;1.75e-07;2!UBERON:0003909;1.75e-07;2!UBERON:0003835;1.75e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,2.47e-25,8;UBERON:0004536,2.47e-25,8;UBERON:0006558,2.47e-25,8;UBERON:0000055,6.92e-21,68;UBERON:0002465,2.42e-20,10;UBERON:0010523,4.64e-18,3;UBERON:0001915,4.64e-18,3;UBERON:0001982,4.64e-18,3;UBERON:0002049,4.83e-18,78;UBERON:0007798,4.83e-18,78;UBERON:0004638,2.11e-17,18;UBERON:0001986,2.11e-17,18;UBERON:0004852,2.11e-17,18;UBERON:0000487,3.07e-14,22;UBERON:0007029,7.55e-14,1;UBERON:0002146,1.42e-13,1;UBERON:0005623,1.42e-13,1;UBERON:0004535,1.58e-12,109;UBERON:0006914,1.58e-12,25;UBERON:0001009,3.73e-12,112;UBERON:0007500,8.29e-10,59;UBERON:0001981,8.29e-10,59;UBERON:0004537,8.29e-10,59;UBERON:0006965,8.29e-10,59;UBERON:0004872,8.64e-09,83;UBERON:0005800,1.12e-07,2;UBERON:0001515,1.12e-07,2;UBERON:0001281,1.36e-07,2;UBERON:0003497,1.36e-07,2;UBERON:0003909,1.36e-07,2;UBERON:0003835,1.36e-07,2 | |||
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| ||
|short_description=p@chr4:140684228..140684239,+ | |short_description=p@chr4:140684228..140684239,+ | ||
}} | }} |
Latest revision as of 01:48, 30 July 2015
Short description: | p@chr4:140684228..140684239, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:140684228..140684239, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.72e-41 | 24 |
lymphangioblast | 1.24e-33 | 6 |
endothelial cell of lymphatic vessel | 1.24e-33 | 6 |
vascular lymphangioblast | 1.24e-33 | 6 |
endothelial cell | 1.53e-33 | 36 |
meso-epithelial cell | 1.27e-26 | 45 |
lining cell | 2.08e-20 | 58 |
barrier cell | 2.08e-20 | 58 |
capillary endothelial cell | 4.64e-18 | 3 |
blood vessel endothelial cell | 2.11e-17 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.11e-17 | 18 |
aortic endothelial cell | 3.02e-09 | 6 |
mesodermal cell | 3.73e-09 | 121 |
thoracic aorta endothelial cell | 1.12e-07 | 2 |
endothelial cell of sinusoid | 1.36e-07 | 2 |
endothelial cell of hepatic sinusoid | 1.36e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 2.47e-25 | 8 |
lymph vasculature | 2.47e-25 | 8 |
lymphatic part of lymphoid system | 2.47e-25 | 8 |
vessel | 6.92e-21 | 68 |
lymphoid system | 2.42e-20 | 10 |
microcirculatory vessel | 4.64e-18 | 3 |
endothelium of capillary | 4.64e-18 | 3 |
capillary | 4.64e-18 | 3 |
vasculature | 4.83e-18 | 78 |
vascular system | 4.83e-18 | 78 |
blood vessel endothelium | 2.11e-17 | 18 |
endothelium | 2.11e-17 | 18 |
cardiovascular system endothelium | 2.11e-17 | 18 |
simple squamous epithelium | 3.07e-14 | 22 |
surface | 7.55e-14 | 1 |
pulmonary valve | 1.42e-13 | 1 |
semi-lunar valve | 1.42e-13 | 1 |
cardiovascular system | 1.58e-12 | 109 |
squamous epithelium | 1.58e-12 | 25 |
circulatory system | 3.73e-12 | 112 |
epithelial tube open at both ends | 8.29e-10 | 59 |
blood vessel | 8.29e-10 | 59 |
blood vasculature | 8.29e-10 | 59 |
vascular cord | 8.29e-10 | 59 |
splanchnic layer of lateral plate mesoderm | 8.64e-09 | 83 |
segment of aorta | 1.12e-07 | 2 |
thoracic aorta | 1.12e-07 | 2 |
hepatic sinusoid | 1.36e-07 | 2 |
abdomen blood vessel | 1.36e-07 | 2 |
sinusoid | 1.36e-07 | 2 |
abdominal segment blood vessel | 1.36e-07 | 2 |