FFCP PHASE1:Hg19::chr4:174451501..174451513,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000507062,ENST00000514673_5end | |association_with_transcript=-8bp_to_ENST00000507062,ENST00000514673_5end | ||
|cluster_id=chr4:174451501..174451513,+ | |||
|description=CAGE_peak_1_at_ENST00000507062_5end,CAGE_peak_1_at_ENST00000514673_5end | |description=CAGE_peak_1_at_ENST00000507062_5end,CAGE_peak_1_at_ENST00000514673_5end | ||
|id=chr4:174451501..174451513,+ | |id=chr4:174451501..174451513,+ | ||
|ontology_enrichment_celltype=CL:0000187!2.22e-10!54;CL:0000680!3.22e-10!57;CL:0000056!3.22e-10!57;CL:0000355!3.22e-10!57;CL:0000183!7.33e-09!59;CL:0000393!1.37e-08!60;CL:0000211!1.37e-08!60;CL:0000192!5.53e-08!42;CL:0000514!5.53e-08!42 | |ontology_enrichment_celltype=CL:0000187!2.22e-10!54;CL:0000680!3.22e-10!57;CL:0000056!3.22e-10!57;CL:0000355!3.22e-10!57;CL:0000183!7.33e-09!59;CL:0000393!1.37e-08!60;CL:0000211!1.37e-08!60;CL:0000192!5.53e-08!42;CL:0000514!5.53e-08!42 | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.12e-09;3!CL:0002195;1.19e-07;2!CL:0002571;1.19e-07;2!CL:0002588;6.22e-07;2!CL:0000349;9.85e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.92e-09,3;CL:0002195,1.20e-07,2;CL:0002571,1.20e-07,2;CL:0002588,7.31e-07,2;CL:0000349,9.05e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0005062;2.78e-07;4!UBERON:0007284;2.78e-07;4!UBERON:0005795;6.73e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007100!5.80e-16!27;UBERON:0004872!1.27e-15!84;UBERON:0000948!7.55e-13!24;UBERON:0005498!7.55e-13!24;UBERON:0004140!7.55e-13!24;UBERON:0009881!7.55e-13!24;UBERON:0004141!7.55e-13!24;UBERON:0003084!7.55e-13!24;UBERON:0007005!7.55e-13!24;UBERON:0004139!7.55e-13!24;UBERON:0004291!7.55e-13!24;UBERON:0003914!8.26e-12!118;UBERON:0002385!1.76e-10!63;UBERON:0001015!1.76e-10!63;UBERON:0000383!1.76e-10!63;UBERON:0000478!1.45e-09!24;UBERON:0001009!2.17e-09!113;UBERON:0001134!4.87e-09!61;UBERON:0002036!4.87e-09!61;UBERON:0003082!4.87e-09!61;UBERON:0001981!1.51e-08!60;UBERON:0007500!1.51e-08!60;UBERON:0004537!1.51e-08!60;UBERON:0006965!1.51e-08!60;UBERON:0007023!5.26e-08!115;UBERON:0000468!7.30e-08!659;UBERON:0004535!7.76e-08!110;UBERON:0004290!1.55e-07!70;UBERON:0000926!2.17e-07!448;UBERON:0004120!2.17e-07!448;UBERON:0006603!2.17e-07!448;UBERON:0000059!3.50e-07!11;UBERON:0001637!4.70e-07!42;UBERON:0003509!4.70e-07!42;UBERON:0004572!4.70e-07!42;UBERON:0003124!5.20e-07!7;UBERON:0003103!6.04e-07!69;UBERON:0001155!6.82e-07!9 | |ontology_enrichment_uberon=UBERON:0007100!5.80e-16!27;UBERON:0004872!1.27e-15!84;UBERON:0000948!7.55e-13!24;UBERON:0005498!7.55e-13!24;UBERON:0004140!7.55e-13!24;UBERON:0009881!7.55e-13!24;UBERON:0004141!7.55e-13!24;UBERON:0003084!7.55e-13!24;UBERON:0007005!7.55e-13!24;UBERON:0004139!7.55e-13!24;UBERON:0004291!7.55e-13!24;UBERON:0003914!8.26e-12!118;UBERON:0002385!1.76e-10!63;UBERON:0001015!1.76e-10!63;UBERON:0000383!1.76e-10!63;UBERON:0000478!1.45e-09!24;UBERON:0001009!2.17e-09!113;UBERON:0001134!4.87e-09!61;UBERON:0002036!4.87e-09!61;UBERON:0003082!4.87e-09!61;UBERON:0001981!1.51e-08!60;UBERON:0007500!1.51e-08!60;UBERON:0004537!1.51e-08!60;UBERON:0006965!1.51e-08!60;UBERON:0007023!5.26e-08!115;UBERON:0000468!7.30e-08!659;UBERON:0004535!7.76e-08!110;UBERON:0004290!1.55e-07!70;UBERON:0000926!2.17e-07!448;UBERON:0004120!2.17e-07!448;UBERON:0006603!2.17e-07!448;UBERON:0000059!3.50e-07!11;UBERON:0001637!4.70e-07!42;UBERON:0003509!4.70e-07!42;UBERON:0004572!4.70e-07!42;UBERON:0003124!5.20e-07!7;UBERON:0003103!6.04e-07!69;UBERON:0001155!6.82e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;6.28e-19;25!UBERON:0000948;2.07e-13;22!UBERON:0003978;1.35e-09;3!UBERON:0000946;1.35e-09;3!UBERON:0003124;2.12e-09;3!UBERON:0000920;2.12e-09;3!UBERON:0004151;2.18e-09;3!UBERON:0000478;1.40e-08;24!UBERON:0000160;5.09e-07;17!UBERON:0002133;9.77e-07;2!UBERON:0005409;9.97e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.50e-20,27;UBERON:0000948,2.31e-14,24;UBERON:0005498,2.31e-14,24;UBERON:0004140,2.31e-14,24;UBERON:0009881,2.31e-14,24;UBERON:0004141,2.31e-14,24;UBERON:0003084,2.31e-14,24;UBERON:0007005,2.31e-14,24;UBERON:0004139,2.31e-14,24;UBERON:0004291,2.31e-14,24;UBERON:0003914,7.99e-12,117;UBERON:0004872,7.67e-11,83;UBERON:0003978,1.31e-09,3;UBERON:0009751,1.31e-09,3;UBERON:0000946,1.31e-09,3;UBERON:0002523,1.31e-09,3;UBERON:0005983,1.31e-09,3;UBERON:0002165,1.31e-09,3;UBERON:0002062,1.31e-09,3;UBERON:0007280,1.31e-09,3;UBERON:0000920,1.92e-09,3;UBERON:0004151,2.21e-09,3;UBERON:0007023,2.31e-09,114;UBERON:0000478,1.29e-08,24;UBERON:0001009,2.84e-08,112;UBERON:0003103,9.55e-08,68;UBERON:0003104,1.29e-07,160;UBERON:0009142,1.29e-07,160;UBERON:0000160,4.39e-07,17;UBERON:0003124,5.04e-07,7;UBERON:0004797,6.09e-07,7;UBERON:0002133,9.78e-07,2 | |||
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| ||
|short_description=p1@ENST00000507062,p1@ENST00000514673 | |short_description=p1@ENST00000507062,p1@ENST00000514673 | ||
}} | }} |
Latest revision as of 03:26, 30 July 2015
Short description: | p1@ENST00000507062, p1@ENST00000514673 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000507062_5end, CAGE_peak_1_at_ENST00000514673_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000507062, ENST00000514673_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.92e-09 | 3 |
hepatic stem cell | 1.20e-07 | 2 |
hepatic mesenchymal stem cell | 1.20e-07 | 2 |
smooth muscle cell of the umbilical vein | 7.31e-07 | 2 |
extraembryonic cell | 9.05e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 8.50e-20 | 27 |
heart | 2.31e-14 | 24 |
primitive heart tube | 2.31e-14 | 24 |
primary heart field | 2.31e-14 | 24 |
anterior lateral plate mesoderm | 2.31e-14 | 24 |
heart tube | 2.31e-14 | 24 |
heart primordium | 2.31e-14 | 24 |
cardiac mesoderm | 2.31e-14 | 24 |
cardiogenic plate | 2.31e-14 | 24 |
heart rudiment | 2.31e-14 | 24 |
epithelial tube | 7.99e-12 | 117 |
splanchnic layer of lateral plate mesoderm | 7.67e-11 | 83 |
valve | 1.31e-09 | 3 |
cardiac mesenchyme | 1.31e-09 | 3 |
cardial valve | 1.31e-09 | 3 |
tunica intima | 1.31e-09 | 3 |
heart layer | 1.31e-09 | 3 |
endocardium | 1.31e-09 | 3 |
endocardial cushion | 1.31e-09 | 3 |
presumptive endocardium | 1.31e-09 | 3 |
egg chorion | 1.92e-09 | 3 |
cardiac chamber | 2.21e-09 | 3 |
adult organism | 2.31e-09 | 114 |
extraembryonic structure | 1.29e-08 | 24 |
circulatory system | 2.84e-08 | 112 |
compound organ | 9.55e-08 | 68 |
mesenchyme | 1.29e-07 | 160 |
entire embryonic mesenchyme | 1.29e-07 | 160 |
intestine | 4.39e-07 | 17 |
chorion | 5.04e-07 | 7 |
blood vessel layer | 6.09e-07 | 7 |
atrioventricular valve | 9.78e-07 | 2 |