FFCP PHASE1:Hg19::chr4:189321796..189321823,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-66bp_to_ENST00000512839,ENST00000513313,uc003izo.1_5end | |||
|cluster_id=chr4:189321796..189321823,+ | |||
|description=CAGE_peak_3_at_ENST00000512839_5end,CAGE_peak_3_at_ENST00000513313_5end,CAGE_peak_3_at_uc003izo.1_5end | |||
|id=chr4:189321796..189321823,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.25e-24!180;CL:0000057!3.86e-17!75;CL:0002620!3.72e-12!23;CL:0002570!3.84e-12!8;CL:0000723!9.55e-12!436;CL:0000048!1.08e-11!430;CL:0000034!3.89e-11!444;CL:0002334!3.95e-11!12;CL:0000188!2.96e-09!9;CL:0000393!1.56e-08!60;CL:0000211!1.56e-08!60;CL:0000569!5.69e-08!4;CL:0000011!5.69e-08!4;CL:0000680!1.99e-07!57;CL:0000056!1.99e-07!57;CL:0000355!1.99e-07!57;CL:0002494!2.04e-07!16;CL:0000187!3.82e-07!54;CL:0002371!6.36e-07!591;CL:0002582!6.79e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002570;5.92e-21;8!CL:0000569;9.68e-11;4!CL:0000188;2.66e-08;9!CL:0002540;1.02e-07;6!CL:0002092;1.26e-07;10!CL:0002582;1.96e-07;3!CL:0002556;3.06e-07;6!CL:0000723;5.17e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002570,4.89e-21,8;CL:0000569,9.52e-11,4;CL:0000011,9.52e-11,4;CL:0000188,2.96e-08,9;CL:0002540,1.11e-07,6;CL:0002092,1.29e-07,10;CL:0002582,2.02e-07,3;CL:0002556,2.65e-07,6;CL:0000048,5.37e-07,427;CL:0000723,8.60e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000011;9.68e-11;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1192;4.67e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:1192,4.97e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.65e-12!83;UBERON:0002329!2.65e-12!83;UBERON:0003077!2.65e-12!83;UBERON:0003059!2.65e-12!83;UBERON:0007282!2.65e-12!83;UBERON:0009618!2.65e-12!83;UBERON:0007285!2.65e-12!83;UBERON:0002199!4.10e-12!45;UBERON:0002416!4.10e-12!45;UBERON:0001013!3.37e-10!14;UBERON:0002097!8.76e-10!40;UBERON:0004290!2.27e-08!70;UBERON:0003129!2.08e-07!11;UBERON:0000486!4.80e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;7.02e-16;14!UBERON:0001434;1.44e-12;36!UBERON:0001474;4.21e-12;18!UBERON:0004765;2.32e-10;26!UBERON:0002371;1.16e-09;12!UBERON:0002204;1.54e-07;70!UBERON:0001758;3.06e-07;6!UBERON:0003672;3.06e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,6.28e-16,14;UBERON:0001758,2.65e-07,6;UBERON:0003672,2.65e-07,6;UBERON:0002384,4.89e-07,371 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,6.31719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0,0.529636723252875,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0.404132016209064,0,0,0,0,0.312160076830321,3.99330275081114,2.09228152772521,0,0.161872944368132,0,0,0,0,0,0.494533858557114,0,0,0,0.750711119231785,0,1.75591048352335,2.45190236639216,2.55404700141215,0,5.74046834204358,0.85422955527427,1.27159140695737,0,0.103052529238439,0.515281080091258,0,0.168776332241266,0,1.51460264546469,0,0,0,0.403008392910561,1.01736355386293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.917119267892,0,0,0,0,0.266422179016099,0,0,0,2.60588947434988,0,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0.260650843404249,0,0,0,0,0,0,0,0.30239029332968,0.744323423456331,0.460385919864187,0.280660094433074,0,0,0.160853921143607,0,0.462629081407967,2.84098760501003,0.574890092096664,5.19254429183621,5.57809816607804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.21945949464557,6.43574099380586,0,0,0,2.22342652071881,4.00526404498075,3.37708084397485,0.137836572484531,0.537101224341368,0,1.27839941124151,0.0890320356467374,0,0,0.127612712494584,0,0.929691098594572,1.25924938732256,2.0911118104818,0,0,0.869932992075073,0.18532421910392,0.429374660225974,0,0.316379424718726,0,0,0,4.13664222303718,0,0,0,0,0.606547444719948,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,11.5084647434869,0,0,0,0,0,8.89095921157095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0.275078873194468,0.83088067605837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553394539744923,0,0.151649117541648,0,0,0,0,4.17913448083247,4.67426619694449,9.98650550704704,7.0079111951783,1.25783950876288,15.1267907671411,3.66144109435078,2.87338755150154,1.08806040407946,0.147855149989634,0,0,0.310525913752519,0,0.265841714557995,0.521745061811734,0,0.761610424337591,0,2.36403256963327,0,0,2.3885753321917,0,0.343395705182793,3.03074539889327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0.123935764259002,0,5.0880696104547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52552838186867,0,0.795664888465099,0,4.43751151147744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@ENST00000512839,p3@ENST00000513313,p3@uc003izo.1 | |||
}} |
Latest revision as of 04:12, 30 July 2015
Short description: | p3@ENST00000512839, p3@ENST00000513313, p3@uc003izo.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000512839_5end, CAGE_peak_3_at_ENST00000513313_5end, CAGE_peak_3_at_uc003izo.1_5end |
Coexpression cluster: | NA |
Association with transcript: | -66bp_to_ENST00000512839, ENST00000513313, uc003izo.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 4.89e-21 | 8 |
cardiac mesenchymal cell | 9.52e-11 | 4 |
migratory trunk neural crest cell | 9.52e-11 | 4 |
cell of skeletal muscle | 2.96e-08 | 9 |
mesenchymal stem cell of the bone marrow | 1.11e-07 | 6 |
bone marrow cell | 1.29e-07 | 10 |
visceral preadipocyte | 2.02e-07 | 3 |
fibroblast of periodontium | 2.65e-07 | 6 |
multi fate stem cell | 5.37e-07 | 427 |
somatic stem cell | 8.60e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 6.28e-16 | 14 |
periodontium | 2.65e-07 | 6 |
dentition | 2.65e-07 | 6 |
connective tissue | 4.89e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system neoplasm | 4.97e-07 | 3 |