FFCP PHASE1:Hg19::chr4:56814119..56814140,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:56814119..56814140,- | |||
|description=CAGE_peak_at_chr4:56814119..56814140,- | |description=CAGE_peak_at_chr4:56814119..56814140,- | ||
|id=chr4:56814119..56814140,- | |id=chr4:56814119..56814140,- | ||
|ontology_enrichment_celltype=CL:0002139;8.86e-34;24!CL:0000071;1.87e-23;18!CL:0000115;2.27e-23;36!CL:0002078;6.55e-15;45!CL:0002138;4.63e-12;6!CL:0002543;7.16e-11;6!CL:0000213;1.53e-10;58!CL:0000215;1.53e-10;58!CL:0000624;1.80e-10;6!CL:1000413;1.78e-09;9!CL:0000236;1.06e-08;13!CL:0000791;3.53e-07;18!CL:0000789;3.53e-07;18!CL:0002419;3.53e-07;18!CL:0002144;7.08e-07;3 | |ontology_enrichment_celltype=CL:0002139!6.85e-19!24;CL:0000115!3.74e-16!35;CL:0000071!5.81e-14!18;CL:0002546!5.81e-14!18;CL:0002078!5.31e-10!44;CL:0000838!6.31e-08!52;CL:0002087!6.62e-08!119;CL:0000213!8.70e-08!57;CL:0000215!8.70e-08!57;CL:0000542!1.51e-07!53;CL:0000051!1.51e-07!53;CL:1000413!4.02e-07!9;CL:0002031!8.38e-07!124 | ||
| | |ontology_enrichment_celltype_v019=CL:0002139;8.86e-34;24!CL:0000071;1.87e-23;18!CL:0000115;2.27e-23;36!CL:0002078;6.55e-15;45!CL:0002138;4.63e-12;6!CL:0002543;7.16e-11;6!CL:0000213;1.53e-10;58!CL:0000215;1.53e-10;58!CL:0000624;1.80e-10;6!CL:1000413;1.78e-09;9!CL:0000236;1.06e-08;13!CL:0000791;3.53e-07;18!CL:0000789;3.53e-07;18!CL:0002419;3.53e-07;18!CL:0002144;7.08e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,5.14e-34,24;CL:0000115,5.33e-29,36;CL:0000071,1.11e-23,18;CL:0002546,1.11e-23,18;CL:0002078,2.06e-21,45;CL:0000213,5.41e-16,58;CL:0000215,5.41e-16,58;CL:0005020,4.65e-12,6;CL:0002138,4.65e-12,6;CL:0005022,4.65e-12,6;CL:0002543,5.51e-11,6;CL:0000624,1.61e-10,6;CL:1000413,1.36e-09,9;CL:0000838,5.73e-09,52;CL:0000542,1.08e-08,53;CL:0000051,1.08e-08,53;CL:0000236,4.82e-08,14;CL:0000791,5.90e-07,18;CL:0000789,5.90e-07,18;CL:0002420,5.90e-07,18;CL:0002419,5.90e-07,18;CL:0000790,5.90e-07,18;CL:0002144,7.36e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;1.87e-23;18!CL:0005022;4.63e-12;6!CL:0000790;3.53e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004638;1.87e-23;18!UBERON:0001986;1.87e-23;18!UBERON:0004852;1.87e-23;18!UBERON:0000487;1.88e-20;22!UBERON:0006914;2.42e-17;25!UBERON:0000490;2.58e-11;33!UBERON:0003915;1.78e-09;9!UBERON:0004700;1.78e-09;9!UBERON:0001917;1.78e-09;9!UBERON:0000055;1.82e-09;65!UBERON:0001638;5.74e-09;9!UBERON:0003920;5.74e-09;9!UBERON:0004582;5.74e-09;9!UBERON:0001473;9.57e-09;8!UBERON:0004536;9.57e-09;8!UBERON:0006558;9.57e-09;8!UBERON:0010523;7.08e-07;3!UBERON:0001915;7.08e-07;3!UBERON:0001982;7.08e-07;3!UBERON:0002465;9.16e-07;10 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!5.42e-15!110;UBERON:0001009!8.38e-15!113;UBERON:0000055!8.55e-15!69;UBERON:0004872!5.09e-14!84;UBERON:0001986!5.81e-14!18;UBERON:0004638!5.81e-14!18;UBERON:0004852!5.81e-14!18;UBERON:0000487!3.47e-13!22;UBERON:0002049!1.08e-12!79;UBERON:0007798!1.08e-12!79;UBERON:0001981!1.40e-12!60;UBERON:0007500!1.40e-12!60;UBERON:0004537!1.40e-12!60;UBERON:0006965!1.40e-12!60;UBERON:0006914!2.00e-10!25;UBERON:0003081!2.59e-10!216;UBERON:0003914!1.37e-08!118;UBERON:0000025!2.22e-07!194;UBERON:0003915!4.02e-07!9;UBERON:0004700!4.02e-07!9;UBERON:0001917!4.02e-07!9;UBERON:0004111!5.54e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.87e-23;18!UBERON:0001986;1.87e-23;18!UBERON:0004852;1.87e-23;18!UBERON:0000487;1.88e-20;22!UBERON:0006914;2.42e-17;25!UBERON:0000490;2.58e-11;33!UBERON:0003915;1.78e-09;9!UBERON:0004700;1.78e-09;9!UBERON:0001917;1.78e-09;9!UBERON:0000055;1.82e-09;65!UBERON:0001638;5.74e-09;9!UBERON:0003920;5.74e-09;9!UBERON:0004582;5.74e-09;9!UBERON:0001473;9.57e-09;8!UBERON:0004536;9.57e-09;8!UBERON:0006558;9.57e-09;8!UBERON:0010523;7.08e-07;3!UBERON:0001915;7.08e-07;3!UBERON:0001982;7.08e-07;3!UBERON:0002465;9.16e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.11e-23,18;UBERON:0001986,1.11e-23,18;UBERON:0004852,1.11e-23,18;UBERON:0000487,9.51e-21,22;UBERON:0000055,5.64e-18,68;UBERON:0006914,1.34e-17,25;UBERON:0002049,2.09e-14,78;UBERON:0007798,2.09e-14,78;UBERON:0004535,2.86e-13,109;UBERON:0004872,4.43e-13,83;UBERON:0007500,8.15e-13,59;UBERON:0001981,8.15e-13,59;UBERON:0004537,8.15e-13,59;UBERON:0006965,8.15e-13,59;UBERON:0001009,1.29e-12,112;UBERON:0003915,1.36e-09,9;UBERON:0004700,1.36e-09,9;UBERON:0001917,1.36e-09,9;UBERON:0001638,5.12e-09,9;UBERON:0003920,5.12e-09,9;UBERON:0004582,5.12e-09,9;UBERON:0001473,9.60e-09,8;UBERON:0004536,9.60e-09,8;UBERON:0006558,9.60e-09,8;UBERON:0003914,1.05e-08,117;UBERON:0003081,1.45e-07,203;UBERON:0004111,2.81e-07,240;UBERON:0010523,7.36e-07,3;UBERON:0001915,7.36e-07,3;UBERON:0001982,7.36e-07,3;UBERON:0002465,9.18e-07,10 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,1.34465029290355,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0,0,0.273748850145768,0,0.382067028739756,0.903106483949403,0.472264687882075,0,0.383829398097213,0.309632246632152,0,0,0,0.232401601740905,0.142169232487422,0.587200878669695,0.553995408531877,0.200544447470142,0.434021741431704,0.223915474239924,0.32389366601898,0,0,0,0.242584061187816,0.232429036905685,0,0.309706370895104,0.28769239232215,0.512321413058201,1.89185783910868,0.344745680736619,0,1.35426486594342,0.564727018627814,0.272906150057846,0.449446968890169,0.612167784741805,0,0.639337125799041,0.989553900560148,0,2.13112375266347,0.290209238628584,0,1.24564449799115,0.502497330513487,0,1.3031330682307,0,0,1.26584954976354,0.633765858935825,0.637812899895131,0.419317291016752,0,0,0,1.14005097496499,1.39241674039363,1.0959849225878,1.75996244461323,1.09227722252426,0.889509253863555,2.56038133539904,2.00197993518006,2.87376219977242,0.661044872784862,2.86216126360609,3.41527781465669,1.17447437874188,2.6759125968766,3.96513985737078,0,0.790152254325231,2.55722701147983,2.35806457649499,2.46721798799411,0.83593247695339,2.28145586643513,6.15482147455153,0,0.779873198196215,3.53527088969805,5.31681347000691,2.16643091012012,0.896639238079726,0.650296737799391,2.13769275984779,2.21080014228679,1.15921234294021,2.52087157375503,1.33770414044857,1.04535523804977,0.679856056185397,6.89796888483458,10.3088233644789,2.27717722817553,0.637130828648193,0,0.950452044448374,1.05402583354441,1.02389288923535,0,1.4206635122641,0,1.00803371612366,0,0.289648807765598,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.589405839739707,0,0,0.324547393654683,0.348259474598534,0,0,0,0,3.37896092523399,1.72046919021225,0.694281003215189,8.47961912886015,9.22898759661793,6.32771496462155,5.43386912995707,8.52775305258785,7.47109151642091,6.02497102976406,11.6820501961653,6.0821768457481,12.935289050053,0.367663080345869,4.0507097394088,7.0546785344423,3.81699933464489,3.37834441449967,1.53316637465883,7.59412527654503,6.22885929363385,0,0,0,0,0.379891534993739,0.264818361626438,0,0.709336764396714,0,1.06748995729705,0.24666754841716,0.311211035399766,2.15537075311501,2.12500474047496,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0.45071417671979,1.70148274740032,0,0,0,0,0.206105058476878,0,0,0.168776332241266,0,0,0,0,0,0,0,1.35282597214308,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3341763647451,0,0,0,0,0.982827216677626,2.36315962672562,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,19.3451039999839,10.648666789262,10.6542325251375,0,0,0,1.63802985597466,0.148631162288728,0,1.17587489739202,0.425325291727159,0,0,0,0,0.088048434013226,0,0.144119953416961,0.12624243342638,0.063497894292169,0.763976851116555,0,0,0.308482478109971,1.20137223137567,1.14330573052231,0,0,0,1.55126058909333,0,0.845302752556,0.26593811658487,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.899756920638513,0,0,0,0.479249710983165,0,0,0.144781306667579,0,0,0,1.57624608161542,1.07813787429759,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.426910231213777,0,0,0,0.496215615637554,0,0,0,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,1.13733384070897,0.510281115829547,2.80690690932781,4.62681758070868,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,1.854738209659,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0.464845549297286,0,0.6970372701606,0.308033580176089,1.06461206063404,0,2.40921484835096,0.429374660225974,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0.202910376962704,0.6196469961995,0.281695602532241,0,0.0982490410131212,1.07001315444375,0.354761064070598,0,0,0,0,0,0,0,1.69458841398202,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0.333698283423817,0,0,0,0,0,0,0,1.46508179271894,0.121360521749513,0,0.284136146806413,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0,2.48655523978033,0,0.511343412510774,0,0,0.0898683511473268,0,0,0.197286811273867,0,1.11136990144637,0,0.185536196323703,0,0,0,1.44999915086959,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0,0,0,0,0,0.638002319463839,0,1.06606955203727,0,0.156980256395025,0.332423363800313,0,0,0,0,0.635746315921515,0,0,0,0,0.995261931078505,0.0884575645033392,3.05515072466813,0.889563386041866,1.72989514525104,2.40170483862547,0.134802265961354,0.802577647298789,0.234264445725339,0.364909578431332,0,0,0,2.41981432097328,0,0.63186579628488,0,0,0,0.661983911750998,0,0,0,0.138674673013139,0,0,0,0.52418000472609,0.859930162358083,0,0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| ||
|short_description=p@chr4:56814119..56814140,- | |short_description=p@chr4:56814119..56814140,- | ||
}} | }} |
Latest revision as of 05:45, 30 July 2015
Short description: | p@chr4:56814119..56814140, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:56814119..56814140, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 5.14e-34 | 24 |
endothelial cell | 5.33e-29 | 36 |
blood vessel endothelial cell | 1.11e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.11e-23 | 18 |
meso-epithelial cell | 2.06e-21 | 45 |
lining cell | 5.41e-16 | 58 |
barrier cell | 5.41e-16 | 58 |
lymphangioblast | 4.65e-12 | 6 |
endothelial cell of lymphatic vessel | 4.65e-12 | 6 |
vascular lymphangioblast | 4.65e-12 | 6 |
vein endothelial cell | 5.51e-11 | 6 |
CD4-positive, alpha-beta T cell | 1.61e-10 | 6 |
endothelial cell of artery | 1.36e-09 | 9 |
lymphoid lineage restricted progenitor cell | 5.73e-09 | 52 |
lymphocyte | 1.08e-08 | 53 |
common lymphoid progenitor | 1.08e-08 | 53 |
B cell | 4.82e-08 | 14 |
mature alpha-beta T cell | 5.90e-07 | 18 |
alpha-beta T cell | 5.90e-07 | 18 |
immature T cell | 5.90e-07 | 18 |
mature T cell | 5.90e-07 | 18 |
immature alpha-beta T cell | 5.90e-07 | 18 |
capillary endothelial cell | 7.36e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.11e-23 | 18 |
endothelium | 1.11e-23 | 18 |
cardiovascular system endothelium | 1.11e-23 | 18 |
simple squamous epithelium | 9.51e-21 | 22 |
vessel | 5.64e-18 | 68 |
squamous epithelium | 1.34e-17 | 25 |
vasculature | 2.09e-14 | 78 |
vascular system | 2.09e-14 | 78 |
cardiovascular system | 2.86e-13 | 109 |
splanchnic layer of lateral plate mesoderm | 4.43e-13 | 83 |
epithelial tube open at both ends | 8.15e-13 | 59 |
blood vessel | 8.15e-13 | 59 |
blood vasculature | 8.15e-13 | 59 |
vascular cord | 8.15e-13 | 59 |
circulatory system | 1.29e-12 | 112 |
endothelial tube | 1.36e-09 | 9 |
arterial system endothelium | 1.36e-09 | 9 |
endothelium of artery | 1.36e-09 | 9 |
vein | 5.12e-09 | 9 |
venous blood vessel | 5.12e-09 | 9 |
venous system | 5.12e-09 | 9 |
lymphatic vessel | 9.60e-09 | 8 |
lymph vasculature | 9.60e-09 | 8 |
lymphatic part of lymphoid system | 9.60e-09 | 8 |
epithelial tube | 1.05e-08 | 117 |
lateral plate mesoderm | 1.45e-07 | 203 |
anatomical conduit | 2.81e-07 | 240 |
microcirculatory vessel | 7.36e-07 | 3 |
endothelium of capillary | 7.36e-07 | 3 |
capillary | 7.36e-07 | 3 |
lymphoid system | 9.18e-07 | 10 |