FFCP PHASE1:Hg19::chr4:57977078..57977087,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:57977078..57977087,- | |||
|description=CAGE_peak_at_chr4:57977078..57977087,- | |||
|id=chr4:57977078..57977087,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002262;6.65e-22;2!CL:1000398;6.65e-22;2!CL:0002575;6.65e-22;2!CL:0000222;7.74e-12;1!CL:0002581;7.74e-12;1!CL:0002591;7.74e-12;1!CL:0000669;1.91e-11;4!CL:0000182;1.96e-08;12!CL:0002548;6.37e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,2.56e-22,2;CL:1000398,2.56e-22,2;CL:0002575,6.69e-22,2;CL:0002581,4.06e-12,1;CL:0002591,1.19e-11,1;CL:0000669,1.92e-11,4;CL:0000182,1.64e-08,12;CL:0002548,7.33e-08,6;CL:0002549,9.96e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;7.74e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.47e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.69e-11!115;UBERON:0000025!8.04e-10!194;UBERON:0002616!1.44e-09!59;UBERON:0003075!9.73e-09!86;UBERON:0007284!9.73e-09!86;UBERON:0000477!2.03e-08!286;UBERON:0001049!2.20e-08!57;UBERON:0005068!2.20e-08!57;UBERON:0006241!2.20e-08!57;UBERON:0007135!2.20e-08!57;UBERON:0000955!2.88e-08!69;UBERON:0006238!2.88e-08!69;UBERON:0002346!6.61e-08!90;UBERON:0004111!9.33e-08!241;UBERON:0000119!1.37e-07!312;UBERON:0005743!2.31e-07!86;UBERON:0000475!3.13e-07!365;UBERON:0000483!3.28e-07!309;UBERON:0001017!8.20e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;6.65e-22;2!UBERON:0003497;6.65e-22;2!UBERON:0003909;6.65e-22;2!UBERON:0003835;6.65e-22;2!UBERON:0001280;6.08e-15;3!UBERON:0004647;6.08e-15;3!UBERON:0002107;4.64e-09;19!UBERON:0006925;4.64e-09;19!UBERON:0003688;6.37e-08;6!UBERON:0002358;6.37e-08;6!UBERON:0003684;6.37e-08;6!UBERON:0001178;6.37e-08;6!UBERON:0002423;6.34e-07;25!UBERON:0003513;6.57e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,2.56e-22,2;UBERON:0003497,2.56e-22,2;UBERON:0003909,2.56e-22,2;UBERON:0003835,2.56e-22,2;UBERON:0001280,3.22e-15,3;UBERON:0004647,3.22e-15,3;UBERON:0005171,3.22e-15,3;UBERON:0002107,4.55e-09,19;UBERON:0006925,4.55e-09,19;UBERON:0008836,4.55e-09,19;UBERON:0002394,4.66e-08,6;UBERON:0003928,4.66e-08,6;UBERON:0003688,6.60e-08,6;UBERON:0002358,6.60e-08,6;UBERON:0003684,6.60e-08,6;UBERON:0001178,6.60e-08,6;UBERON:0008835,7.44e-08,22;UBERON:0003894,7.44e-08,22;UBERON:0009854,1.61e-07,23;UBERON:0003513,5.03e-07,7;UBERON:0007499,6.25e-07,25;UBERON:0009497,6.25e-07,25;UBERON:0000015,6.25e-07,25;UBERON:0002423,6.25e-07,25;UBERON:0006235,6.25e-07,25;UBERON:0004161,6.25e-07,25;UBERON:0005629,9.96e-07,2;UBERON:0005358,9.96e-07,2;UBERON:0001886,9.96e-07,2;UBERON:0004086,9.96e-07,2;UBERON:0005282,9.96e-07,2;UBERON:0005281,9.96e-07,2 | |||
|phase1_expression=0,0.428201047781966,0.422863212287913,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0.0945348171640679,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.379891534993739,0.132409180813219,0.573673241497627,0,1.12135520028461,0,1.2333377420858,0,0.269421344139376,0,1.66493170409425,0.576175924479999,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0,0,0,0,0,0,0,0,0.150238058906597,0.453728732640084,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0,0,0.292311015483596,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,1.40241773803446,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0.821860859650752,0,0.462985512576611,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0,0.126995788584338,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,1.19812427745791,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0,0.473107245101804,0,0.300946099727719,0,0,0.664225598535437,0,0.0868836144680828,1.17480694477644,1.37257369524342,0,0,0,0,0,0,0,0.306923946576125,0.280660094433074,0.384417447767103,1.53512174720011,0.321707842287215,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0.231046011313244,0,0,0.527758144464379,0,0,0,0,0.270946437543853,0.501689773854853,0.254876273045038,0,0,0,0,0,0.656029291399411,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0.214840489736547,0,0,0,0,0,0,0,0.929691098594572,0.62962469366128,0.6970372701606,0,0,0,0.74129687641568,0.715624433709956,0,0,0.190630193923825,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0,0,0.409499734223957,0.141405431953713,1.13008116620243,0,0,0.438450885253763,0,0,0.811641507850816,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0.79312517629427,0,0,0.245040215981032,0,0,0.142283686696828,0,0.199579371432817,0.191505370132367,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0.111308705022906,0,0,0.398495976502139,0,0,4.39755334759266,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.60298219312704,0,0,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.269604531922708,0,0,0,0,0,0.789168805698781,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.134366944973453,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0.367182116944987,0.105600336519406,0,0,0.714695326373367,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0.517131825446202,0.26446520348538,0,0,0,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0.886068179966986,0,0.250381861413,0.573409195690071,0.776503360757966,0.124192805882767,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0.889811221596536,0.228840068396924,0,0,0.147855149989634,0,0,0.155262956876259,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0.796191777397232,0.400027764663154,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0.0788617450012534,0,0,0,0.128458450192919,2.8339315265117,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0.0675375846183947,0,0.413373593002368,0,0,0,0.496211178389294,0,0,0.535701835878287,0,0,0,0,0,0,0.135939465953663,0.328863867814245,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0.588925401344836,0,0,0.169927114687817,0.187967835959707,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0.218531143927391,0.126698501011437,0,0,0,0,0.151557396436479,0,0.829169439458779,0.310298987585686,0.213233981900981,0.23806443146374,0.0645889098360061,0,0.112131862580613,0.190941474834495,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |||
|short_description=p@chr4:57977078..57977087,- | |||
}} |
Latest revision as of 05:54, 30 July 2015
Short description: | p@chr4:57977078..57977087, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:57977078..57977087, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 2.56e-22 | 2 |
endothelial cell of hepatic sinusoid | 2.56e-22 | 2 |
central nervous system pericyte | 6.69e-22 | 2 |
perirenal preadipocyte | 4.06e-12 | 1 |
smooth muscle cell of the pulmonary artery | 1.19e-11 | 1 |
pericyte cell | 1.92e-11 | 4 |
hepatocyte | 1.64e-08 | 12 |
cardiac fibroblast | 7.33e-08 | 6 |
fibroblast of choroid plexus | 9.96e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 2.56e-22 | 2 |
abdomen blood vessel | 2.56e-22 | 2 |
sinusoid | 2.56e-22 | 2 |
abdominal segment blood vessel | 2.56e-22 | 2 |
liver parenchyma | 3.22e-15 | 3 |
liver lobule | 3.22e-15 | 3 |
hepatic duct | 3.22e-15 | 3 |
liver | 4.55e-09 | 19 |
digestive gland | 4.55e-09 | 19 |
liver bud | 4.55e-09 | 19 |
bile duct | 4.66e-08 | 6 |
digestive system duct | 4.66e-08 | 6 |
omentum | 6.60e-08 | 6 |
peritoneum | 6.60e-08 | 6 |
abdominal cavity | 6.60e-08 | 6 |
visceral peritoneum | 6.60e-08 | 6 |
hepatic diverticulum | 7.44e-08 | 22 |
liver primordium | 7.44e-08 | 22 |
digestive tract diverticulum | 1.61e-07 | 23 |
trunk blood vessel | 5.03e-07 | 7 |
epithelial sac | 6.25e-07 | 25 |
epithelium of foregut-midgut junction | 6.25e-07 | 25 |
anatomical boundary | 6.25e-07 | 25 |
hepatobiliary system | 6.25e-07 | 25 |
foregut-midgut junction | 6.25e-07 | 25 |
septum transversum | 6.25e-07 | 25 |
vascular plexus | 9.96e-07 | 2 |
ventricle of nervous system | 9.96e-07 | 2 |
choroid plexus | 9.96e-07 | 2 |
brain ventricle | 9.96e-07 | 2 |
ventricular system of brain | 9.96e-07 | 2 |
ventricular system of central nervous system | 9.96e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.47e-11 | 1 |