FFCP PHASE1:Hg19::chr5:106725747..106725757,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:106725747..106725757,+ to FFCP PHASE1:Hg19::chr5:106725747..106725757,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:106725747..106725757,+ | |||
|coexpression_cluster_id=C82 | |||
|description=CAGE_peak_at_chr5:106725747..106725757,+ | |||
|id=chr5:106725747..106725757,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.09e-65!42;CL:0000860!5.48e-61!45;CL:0000766!3.16e-44!76;CL:0002009!9.20e-44!65;CL:0002194!1.97e-41!63;CL:0000576!1.97e-41!63;CL:0000040!1.97e-41!63;CL:0000559!1.97e-41!63;CL:0000557!1.08e-39!71;CL:0000839!7.28e-37!70;CL:0000738!2.22e-32!140;CL:0000763!7.26e-31!112;CL:0000049!7.26e-31!112;CL:0002393!4.28e-30!9;CL:0002397!4.28e-30!9;CL:0002087!1.97e-28!119;CL:0000037!2.80e-25!172;CL:0000566!2.80e-25!172;CL:0000988!1.44e-23!182;CL:0002031!1.05e-22!124;CL:0002032!6.13e-21!165;CL:0000837!6.13e-21!165;CL:0000767!1.22e-18!3;CL:0000842!3.53e-17!3;CL:0000224!5.06e-13!4;CL:0000134!5.37e-09!358;CL:0000080!7.60e-09!6;CL:0002320!1.05e-08!365;CL:0000034!2.68e-08!444;CL:0000875!3.63e-08!3;CL:0002396!3.63e-08!3;CL:0000048!5.97e-08!430;CL:0000723!9.43e-08!436;CL:0000219!1.12e-07!390;CL:0000094!2.87e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000767;1.66e-74;3!CL:0002393;9.18e-38;6!CL:0002397;9.18e-38;6!CL:0000094;1.49e-28;8!CL:0000081;5.33e-21;11!CL:0000766;2.45e-13;69!CL:0000576;3.90e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000767,1.29e-74,3;CL:0000094,1.36e-28,8;CL:0002393,1.77e-25,9;CL:0002397,1.77e-25,9;CL:0000766,1.13e-21,72;CL:0000081,4.98e-21,11;CL:0000860,5.92e-15,42;CL:0002057,5.92e-15,42;CL:0000763,1.54e-14,108;CL:0000049,1.54e-14,108;CL:0000473,4.03e-13,48;CL:0000234,4.03e-13,48;CL:0000738,1.45e-11,136;CL:0002194,1.51e-10,59;CL:0000576,1.51e-10,59;CL:0000040,1.51e-10,59;CL:0000559,1.51e-10,59;CL:0002009,3.25e-10,61;CL:0002032,9.03e-10,161;CL:0000837,9.03e-10,161;CL:0000839,1.81e-09,66;CL:0000037,2.31e-09,168;CL:0000557,2.48e-09,67;CL:0000988,6.97e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.83e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.02e-34!80;UBERON:0002390!5.00e-34!102;UBERON:0003061!5.00e-34!102;UBERON:0002193!4.92e-33!112;UBERON:0001474!5.65e-32!86;UBERON:0004765!1.60e-26!101;UBERON:0001434!1.60e-26!101;UBERON:0002405!7.82e-25!115;UBERON:0003081!6.47e-16!216;UBERON:0002204!1.36e-15!167;UBERON:0002384!2.62e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.91e-08,76;UBERON:0001474,1.12e-07,82;UBERON:0004765,5.16e-07,90;UBERON:0002405,8.56e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,4.22212337906934,3.56077083626975,0,0,0,0,0,0,3.32397245119126,2.20598892217156,3.90619567288533,0,0,0,0,0,0,0,0,0.619412741790207,0.28769239232215,0,0.236482229888585,1.37898272294647,1.93645405075148,0,0,0,0,0.612167784741805,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0.521482918420201,0.868755378820466,0.605399502633369,0.736555271975129,0.949387162322653,0.211255286311942,0,0.628975936525128,0.112328631146495,0.450530678524519,0.16072558669708,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,4.22212337906934,3.56077083626975,0,0,0,0,0,0,3.32397245119126,2.20598892217156,3.90619567288533,0,0,0,0,0,0,0,0,0.619412741790207,0.28769239232215,0,0.236482229888585,1.37898272294647,1.93645405075148,0,0,0,0,0.612167784741805,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0.521482918420201,0.868755378820466,0.605399502633369,0.736555271975129,0.949387162322653,0.211255286311942,0,0.628975936525128,0.112328631146495,0.450530678524519,0.16072558669708,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:106725747..106725757,+ | |||
}} | }} |
Latest revision as of 08:29, 30 July 2015
Short description: | p@chr5:106725747..106725757, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:106725747..106725757, + |
Coexpression cluster: | C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
basophil | 1.29e-74 | 3 |
granulocyte | 1.36e-28 | 8 |
intermediate monocyte | 1.77e-25 | 9 |
CD14-positive, CD16-positive monocyte | 1.77e-25 | 9 |
myeloid leukocyte | 1.13e-21 | 72 |
blood cell | 4.98e-21 | 11 |
classical monocyte | 5.92e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.92e-15 | 42 |
myeloid cell | 1.54e-14 | 108 |
common myeloid progenitor | 1.54e-14 | 108 |
defensive cell | 4.03e-13 | 48 |
phagocyte | 4.03e-13 | 48 |
leukocyte | 1.45e-11 | 136 |
monopoietic cell | 1.51e-10 | 59 |
monocyte | 1.51e-10 | 59 |
monoblast | 1.51e-10 | 59 |
promonocyte | 1.51e-10 | 59 |
macrophage dendritic cell progenitor | 3.25e-10 | 61 |
hematopoietic oligopotent progenitor cell | 9.03e-10 | 161 |
hematopoietic multipotent progenitor cell | 9.03e-10 | 161 |
myeloid lineage restricted progenitor cell | 1.81e-09 | 66 |
hematopoietic stem cell | 2.31e-09 | 168 |
granulocyte monocyte progenitor cell | 2.48e-09 | 67 |
hematopoietic cell | 6.97e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.91e-08 | 76 |
bone element | 1.12e-07 | 82 |
skeletal element | 5.16e-07 | 90 |
immune system | 8.56e-07 | 93 |