FFCP PHASE1:Hg19::chr5:172195833..172195881,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:172195833..172195881,- to FFCP PHASE1:Hg19::chr5:172195833..172195881,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-176bp_to_AJ227912_5end | |||
|cluster_id=chr5:172195833..172195881,- | |||
|coexpression_cluster_id=C250 | |||
|description=CAGE_peak_2_at_AJ227912_5end | |||
|id=chr5:172195833..172195881,- | |||
|ontology_enrichment_celltype=CL:0002057!1.05e-18!42;CL:0000860!3.03e-16!45;CL:0000766!8.73e-11!76;CL:0000557!1.41e-07!71;CL:0002009!1.58e-07!65;CL:0000839!2.82e-07!70;CL:0002194!4.48e-07!63;CL:0000576!4.48e-07!63;CL:0000040!4.48e-07!63;CL:0000559!4.48e-07!63;CL:0000136!7.91e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.79e-14;33!CL:0002057;1.79e-14;33!CL:0000576;1.14e-10;48!CL:0000766;7.01e-10;69!CL:0000473;5.81e-09;39!CL:0000234;5.81e-09;39!CL:0000136;1.23e-08;13!CL:0000094;1.75e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.27e-22,42;CL:0002057,1.27e-22,42;CL:0000473,1.30e-17,48;CL:0000234,1.30e-17,48;CL:0000766,2.03e-17,72;CL:0000738,4.56e-13,136;CL:0000557,6.96e-13,67;CL:0002009,2.64e-12,61;CL:0000839,8.31e-12,66;CL:0002194,1.18e-11,59;CL:0000576,1.18e-11,59;CL:0000040,1.18e-11,59;CL:0000559,1.18e-11,59;CL:0002320,6.85e-09,361;CL:0002031,1.58e-08,120;CL:0002087,1.66e-08,115;CL:0000136,1.94e-08,15;CL:0000134,5.68e-08,354;CL:0002393,6.57e-08,9;CL:0002397,6.57e-08,9;CL:0000094,1.65e-07,8;CL:0000763,2.32e-07,108;CL:0000049,2.32e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.85e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.28e-11!216;UBERON:0002390!6.38e-10!102;UBERON:0003061!6.38e-10!102;UBERON:0000926!1.20e-09!448;UBERON:0004120!1.20e-09!448;UBERON:0006603!1.20e-09!448;UBERON:0002193!8.55e-09!112;UBERON:0002371!8.63e-08!80;UBERON:0001474!3.45e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.13e-13,203;UBERON:0000926,9.16e-13,315;UBERON:0004120,9.16e-13,315;UBERON:0006603,9.16e-13,315;UBERON:0002390,1.06e-12,98;UBERON:0003061,1.06e-12,98;UBERON:0002371,2.83e-12,76;UBERON:0004765,3.53e-11,90;UBERON:0001474,5.81e-11,82;UBERON:0002193,1.24e-10,108;UBERON:0001434,1.61e-09,100;UBERON:0002405,6.33e-09,93;UBERON:0002384,1.41e-08,371;UBERON:0002204,8.75e-07,167 | |||
|phase1_expression=6.54042165374004,2.99740733447376,7.18867460889453,7.00513088471913,4.46961094427288,1.74467704820074,10.1319951267324,8.2123583545488,3.91778442299758,0.737201809504527,5.58240934377942,0,0.263766978228454,6.31208400096238,3.64537113300707,0.672325146451775,0.602694528023977,0,0.975865597581014,0.246242116153576,0.408001382488506,0,0,0,0,0,0,0,11.4075640286182,3.45446458287491,8.66970290570026,0,0,0.369754010166788,0.0774672005803016,0,0.587200878669695,3.87796785972314,8.22232234627581,8.89744569934992,0.447830948479849,0,0.515151135268373,3.34415949192999,1.88937971844405,2.18325655069035,2.78914844286822,1.6446715520873,3.71647645074124,4.31538588483226,3.07392847834921,2.83778675866302,31.7166026277689,7.74581620300591,14.8969135253776,9.41211697713024,12.5536829026609,9.88783331558372,26.0171308515267,22.7859609224026,28.7701706609569,1.64925650093358,3.19141852194611,0.852449501065388,6.09439401120026,3.97169657283798,3.73693349397345,2.26123798731069,0.521482918420201,1.95469960234605,2.42159801053347,1.47311054395026,4.43047342417238,9.0839773114135,11.4806321981124,5.45112478321777,7.30136102452218,10.8127362845885,4.66104201421532,5.98526761856622,7.9566670879636,5.84525292046829,0,0,0,0.853460445133014,0,0,0,0,2.27685187643779,6.45960908308033,6.11637165000366,2.64342657158052,1.12101712596307,0.790152254325231,3.540775862049,7.07419372948497,5.96244347098577,0.167186495390678,2.93330039970231,1.89379122293893,3.89653456815823,0,4.12448270464772,2.21533894583621,2.97884250141517,0,0.130059347559878,0,0,0,2.22429844743091,1.07016331235885,1.04535523804977,0.113309342697566,4.21542542962113,3.09264700934367,3.79529538029254,0,0,0,0.301150238155546,0.127986611154418,1.24930726552346,0,0,11.8947978502592,12.3022490060413,6.51709817472595,0,2.01210257911091,0.511450247374121,1.44575660953827,1.50401373190767,2.02785126545153,0,0.486634870302636,0.283604451492204,0.221729397462564,0.790513071238134,1.5062593682237,0,0.370784442784429,0,0.174129737299267,0,0.238490624305342,1.14398982156026,0,0.39752481473341,0,0.347140501607594,0.56530794192401,1.67799774483962,0.275118041940067,0.208994966536811,0.258416759169329,0.71153252537342,0.33472061276467,2.81980521976403,1.52054421143703,1.46437234528902,0,0,0.17859945656816,0,0.225222960966644,0,0,0.183201743930407,7.9068250461638,3.87780264148325,0.436094052142534,1.98788780678127,2.02608818663328,2.1185468930115,2.0078563452417,1.06400514659507,0.560677600142307,1.06748995729705,1.72667283892012,0,0.269421344139376,0,0.454072282934794,0,0.234321431833797,1.87296046098192,0,3.58676833324323,0.117434498643765,0.161872944368132,0.140450806702248,0,0.245668634623536,1.23990937410919,1.18800285728205,0.741800787835671,0,0.718618141816238,0,0,0.277064115484183,0,0.30648779579902,0.45071417671979,0.794025282120147,0.358779271377724,0.427114777637135,0.847727604638247,0.300091096084402,0.515262646192195,0.772921620136887,0.558350568994769,1.35021065793013,1.16924406193438,0.252433774244115,0.552299391853796,0.646584227275248,2.4850671476163,0.705264687593482,0,0.193260853163297,0,0.286804595389004,0.243947412259191,0,0.348581828608555,0.10366105501537,0,0,0,0,0,3.25057549622385,1.44375896333917,0.354920400119532,0.168584690078102,0,0.330881918197182,0.653638332277218,0.474541238222193,0.269662616320329,0.196221465125346,0.38474715694639,0,7.01208869017229,0.4115740113314,0,2.53510069643662,3.9313088667105,5.90789906681404,0,0.368965315629341,0.171567810298526,0.329250856225877,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0.34779121492523,0,0,1.38895653772983,0.380508304469197,0.790204397959275,0,0,0,0.445893486866185,0,0.335964256397719,0.141775097242386,0.447792613514241,0.581267877027924,0.383382679165211,0,0.088048434013226,77.1260589811672,50.5861036493535,58.3240042429875,0,0,0,0,0.102827492703324,0,0.285826432630578,0.672786506072164,0.87192013766656,0.36669142910475,0.904902010304444,0,0,2.6593811658487,2.08014873822732,0,2.83698264046557,0.532844358032199,2.85955987316295,1.62786481617433,0.823240336780769,0.325736184293735,2.13235169245527,1.58390374586686,1.50719688529793,1.74306691720059,3.09916272664377,0,0.502257091432126,0,1.4377491329495,0,0,1.30303176000821,0.821905290201534,0.358121926479791,0.112085143993527,11.8218456121156,6.46882724578552,10.7808150474989,0.254094624222463,1.30139853857622,0,0,0,20.9721966705211,32.9077605124427,31.0811635077027,2.69921281782108,4.00136416847742,0.542530047399471,1.03985430765404,0.892144943985809,0.946214490203608,0.468565659970853,0.902838299183157,2.27407504055985,1.03473071292505,1.99267679560631,0.184369168541703,0.60818530127658,2.34961388955289,0,3.72182447021197,14.6685656556659,5.87001567918944,1.81876542867756,3.32870879020994,0.604780586659361,2.23297027036899,0.153461973288062,0.841980283299221,4.74114852246094,2.04682899626681,3.05622450172854,2.96836132889982,0,1.59805552781814,1.88892458831761,1.55776328755086,2.44041794765914,0.604297247958111,1.2030388218197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| ||
|short_description=p2@AJ227912 | |||
}} | }} |
Latest revision as of 13:06, 30 July 2015
Short description: | p2@AJ227912 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AJ227912_5end |
Coexpression cluster: | C250_Mast_Neutrophils_CD14_Eosinophils_CD8_Peripheral_CD4 |
Association with transcript: | -176bp_to_AJ227912_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.27e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.27e-22 | 42 |
defensive cell | 1.30e-17 | 48 |
phagocyte | 1.30e-17 | 48 |
myeloid leukocyte | 2.03e-17 | 72 |
leukocyte | 4.56e-13 | 136 |
granulocyte monocyte progenitor cell | 6.96e-13 | 67 |
macrophage dendritic cell progenitor | 2.64e-12 | 61 |
myeloid lineage restricted progenitor cell | 8.31e-12 | 66 |
monopoietic cell | 1.18e-11 | 59 |
monocyte | 1.18e-11 | 59 |
monoblast | 1.18e-11 | 59 |
promonocyte | 1.18e-11 | 59 |
connective tissue cell | 6.85e-09 | 361 |
hematopoietic lineage restricted progenitor cell | 1.58e-08 | 120 |
nongranular leukocyte | 1.66e-08 | 115 |
fat cell | 1.94e-08 | 15 |
mesenchymal cell | 5.68e-08 | 354 |
intermediate monocyte | 6.57e-08 | 9 |
CD14-positive, CD16-positive monocyte | 6.57e-08 | 9 |
granulocyte | 1.65e-07 | 8 |
myeloid cell | 2.32e-07 | 108 |
common myeloid progenitor | 2.32e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.13e-13 | 203 |
mesoderm | 9.16e-13 | 315 |
mesoderm-derived structure | 9.16e-13 | 315 |
presumptive mesoderm | 9.16e-13 | 315 |
hematopoietic system | 1.06e-12 | 98 |
blood island | 1.06e-12 | 98 |
bone marrow | 2.83e-12 | 76 |
skeletal element | 3.53e-11 | 90 |
bone element | 5.81e-11 | 82 |
hemolymphoid system | 1.24e-10 | 108 |
skeletal system | 1.61e-09 | 100 |
immune system | 6.33e-09 | 93 |
connective tissue | 1.41e-08 | 371 |
musculoskeletal system | 8.75e-07 | 167 |