FFCP PHASE1:Hg19::chr6:36653937..36653958,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:36653937..36653958,+ to FFCP PHASE1:Hg19::chr6:36653937..36653958,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:36653937..36653958,+ | |||
|coexpression_cluster_id=C672 | |||
|description=CAGE_peak_at_chr6:36653937..36653958,+ | |||
|id=chr6:36653937..36653958,+ | |||
|ontology_enrichment_celltype=CL:0002371!1.14e-23!591;CL:0000548!7.58e-20!679;CL:0000004!7.58e-20!679;CL:0000255!7.58e-20!679;CL:0000144!1.72e-19!625;CL:0000012!5.34e-19!682;CL:0002057!3.02e-15!42;CL:0000860!4.68e-14!45;CL:0000003!1.47e-12!722;CL:0000048!2.37e-12!430;CL:0000723!4.53e-12!436;CL:0000063!3.59e-11!578;CL:0000034!4.10e-11!444;CL:0002194!4.21e-10!63;CL:0000576!4.21e-10!63;CL:0000040!4.21e-10!63;CL:0000559!4.21e-10!63;CL:0002009!4.70e-10!65;CL:0000557!1.21e-08!71;CL:0000839!3.10e-08!70;CL:0000055!6.92e-08!180;CL:0000192!7.44e-08!42;CL:0000514!7.44e-08!42;CL:0002320!1.95e-07!365;CL:0000766!5.57e-07!76;CL:0000134!6.01e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.73e-21;33!CL:0002057;2.73e-21;33!CL:0000473;4.29e-16;39!CL:0000234;4.29e-16;39!CL:0000576;9.79e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.39e-19,42;CL:0002057,5.39e-19,42;CL:0000473,2.49e-17,48;CL:0000234,2.49e-17,48;CL:0002009,4.65e-14,61;CL:0002194,1.02e-13,59;CL:0000576,1.02e-13,59;CL:0000040,1.02e-13,59;CL:0000559,1.02e-13,59;CL:0000048,2.19e-13,427;CL:0000723,1.07e-12,433;CL:0000034,8.12e-12,441;CL:0000557,8.16e-12,67;CL:0000839,3.84e-11,66;CL:0000766,4.18e-10,72;CL:0002320,5.47e-10,361;CL:0000134,6.14e-10,354;CL:0000219,4.80e-08,386;CL:0002539,9.48e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;3.83e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!5.90e-14!448;UBERON:0004120!5.90e-14!448;UBERON:0006603!5.90e-14!448;UBERON:0002204!2.77e-13!167;UBERON:0003081!1.12e-11!216;UBERON:0000468!1.54e-08!659;UBERON:0002371!2.79e-08!80;UBERON:0000467!5.07e-08!625;UBERON:0004765!7.23e-08!101;UBERON:0001434!7.23e-08!101;UBERON:0000480!7.64e-08!626;UBERON:0001474!2.79e-07!86;UBERON:0002384!7.22e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;4.06e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,9.41e-15,315;UBERON:0004120,9.41e-15,315;UBERON:0006603,9.41e-15,315;UBERON:0002204,6.61e-13,167;UBERON:0003081,9.31e-13,203;UBERON:0002371,1.59e-10,76;UBERON:0004765,1.76e-10,90;UBERON:0001474,1.02e-09,82;UBERON:0001434,1.47e-09,100;UBERON:0002384,2.38e-09,371;UBERON:0002405,2.29e-08,93;UBERON:0001135,5.16e-08,15;UBERON:0002390,1.50e-07,98;UBERON:0003061,1.50e-07,98;UBERON:0002193,2.47e-07,108;UBERON:0001637,5.65e-07,42;UBERON:0003509,5.65e-07,42;UBERON:0004572,5.65e-07,42;UBERON:0004237,9.48e-07,10;UBERON:0004695,9.48e-07,10;UBERON:0002111,9.48e-07,10;UBERON:0004178,9.48e-07,10 | |||
|phase1_expression=2.54349730978779,2.78330681058278,1.55049844505568,2.00146596706261,1.78784437770915,3.48935409640147,5.06599756336621,1.26343974685366,0.783556884599516,0.245733936501509,6.97801167972428,0.218441372130172,1.05506791291381,0.866364470720326,0,4.03395087871065,3.01347264011988,4.38186054232424,3.90346239032406,0.369363174230364,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0.0764134057479513,0,0.550975469195755,1.57345710739562,0,0.309632246632152,3.67768489791571,1.8072355126695,4.06729411183466,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0,0,0,0.290796477559129,1.51150377475524,0.727752183563449,2.55671940596253,0.822335776043652,4.02618282163635,8.05538698502021,8.45330331546032,9.93225365532058,6.55016793399575,1.93645405075148,14.8969135253776,3.38836211176688,2.72906150057846,2.9214052977861,10.7129362329816,6.09765151444578,8.95071976118658,4.28806690242731,2.99195486432448,2.55734850319616,7.54544020434318,1.70215567407342,6.85104473895132,4.27122730936464,8.86520961314342,6.08128765174327,2.42159801053347,3.31449872388808,3.48108626184973,1.05627643155971,1.06302149982522,0.209658645508376,0.786300418025466,1.05123824989054,0,0.570025487482497,0.39783335439818,0,0,0,0,0,0,0,0,0,0,1.76171156811282,0.382273228125229,0,0,0,0.196709770113833,1.57204305099666,0.205601498999509,0,0,0,0,0.334231370655521,0,0,0,0.512365278902701,0.260118695119756,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,1.0843174571537,2.00535164254356,1.73815822752988,0,0,0.0945348171640679,0,0.175669571386252,0.130979075497713,0.364295288292542,1.11235332835329,0.97364218096405,1.56716763569341,3.0580330919339,0.715471872916026,0,0.371457501329565,0,0,0.347140501607594,0,1.25849830862972,1.10047216776027,1.46296476575767,0.775250277507987,1.06729878806013,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0,2.43042584364528,0.267899184852239,0,0.112611480483322,0,0,0.732806975721629,0,0,0.872188104285069,1.49091585508596,1.01304409331664,0.529636723252875,1.72101972449288,1.06400514659507,1.12135520028461,0,4.68668341992604,0.311211035399766,0.404132016209064,0.163461903113459,0.151357427644931,0,0.234321431833797,0.624320153660641,0,0.747243402759005,0.352303495931295,0.161872944368132,0.561803226808994,0.61246251376468,0.491337269247072,0.413303124703062,3.56400857184616,1.7308685049499,0.910161361938026,3.59309070908119,0.168336113954066,0,0.277064115484183,0.438977620880838,3.0648779579902,0.300476117813194,0.453728732640084,0.358779271377724,1.92201649936711,1.05965950579781,0,1.03052529238439,1.28820270022815,0.744467425326359,0,0.68205903612839,1.00973509697646,1.01254888506529,1.13152239773168,0.355009592516614,1.10827308050404,0.508681776931463,1.73934767846967,0.272746120590835,0.286804595389004,0.121973706129595,0.132529768321485,0,0.207322110030741,0.252320850875628,0,0,1.92972281457866,1.38134921352481,1.85747171212792,4.33127689001751,0.354920400119532,0.337169380156203,0.482022059766964,0.441175890929576,0.217879444092406,0.71181185733329,0.269662616320329,1.17732879075208,0.38474715694639,2.21446636387394,2.80483547606892,0.4115740113314,0,1.26755034821831,0.982827216677626,0,0,0.122988438543114,0,0.658501712451753,0,0.904760751704678,0.370353780634118,1.95484983186195,1.03993478527958,1.44331342025273,0.463721619900307,0.469634776943287,1.01056513432752,0,0.380508304469197,0,0.858486162094873,0.738651018262192,0.234004265139238,0.594524649154913,1.87467667973554,1.17587489739202,1.41775097242386,0.806026704325635,0.871901815541886,0.383382679165211,0,0,0.207328115540772,0.720599767084807,0.25248486685276,0.063497894292169,1.52795370223311,0,0,0.102827492703324,1.20137223137567,1.14330573052231,0,0.43596006883328,0,0.387815147273333,3.57656445851882,0,1.59562869950922,2.08014873822732,0.514414748524284,0,0.799266537048298,0.285955987316295,2.17048642156577,0,0,1.42156779497018,0.791951872933429,0,2.61460037580088,0.399891964728228,1.2162378064119,1.00451418286425,0,0.239624855491583,1.14861935834114,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0.431255149719035,0.128343036279748,0.254094624222463,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0,0.12269149171914,2.00068208423871,0.813795071099207,0.623912584592421,4.46072471992904,2.05013139544115,0.35142424497814,0.902838299183157,9.09630016223939,4.1389228517002,0,0.553107505625109,1.04260337361699,0.587403472388222,1.02943027143257,0.413536052245775,1.72571360654893,0.853820462427555,0.909382714338778,9.98612637062982,2.72151263996712,2.97729369382532,0.153461973288062,3.92924132206303,2.30650468660262,1.53512174720011,1.12597744800525,7.42090332224955,0.771048469013278,1.77561725313127,0.0821271560138091,1.03850885836724,0.697262270759755,0,3.80962293576241,2.94659164594868,1.14814448164607,1.0925470080403,1.57349297951309,0.902399225814824,1.84836809050595,0,0,0.633309773357254,2.27466768141793,0,0,1.54227252690289,0.27094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|phase1_expression=2.54349730978779,2.78330681058278,1.55049844505568,2.00146596706261,1.78784437770915,3.48935409640147,5.06599756336621,1.26343974685366,0.783556884599516,0.245733936501509,6.97801167972428,0.218441372130172,1.05506791291381,0.866364470720326,0,4.03395087871065,3.01347264011988,4.38186054232424,3.90346239032406,0.369363174230364,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0.0764134057479513,0,0.550975469195755,1.57345710739562,0,0.309632246632152,3.67768489791571,1.8072355126695,4.06729411183466,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0,0,0,0.290796477559129,1.51150377475524,0.727752183563449,2.55671940596253,0.822335776043652,4.02618282163635,8.05538698502021,8.45330331546032,9.93225365532058,6.55016793399575,1.93645405075148,14.8969135253776,3.38836211176688,2.72906150057846,2.9214052977861,10.7129362329816,6.09765151444578,8.95071976118658,4.28806690242731,2.99195486432448,2.55734850319616,7.54544020434318,1.70215567407342,6.85104473895132,4.27122730936464,8.86520961314342,6.08128765174327,2.42159801053347,3.31449872388808,3.48108626184973,1.05627643155971,1.06302149982522,0.209658645508376,0.786300418025466,1.05123824989054,0,0.570025487482497,0.39783335439818,0,0,0,0,0,0,0,0,0,0,1.76171156811282,0.382273228125229,0,0,0,0.196709770113833,1.57204305099666,0.205601498999509,0,0,0,0,0.334231370655521,0,0,0,0.512365278902701,0.260118695119756,0,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,1.0843174571537,2.00535164254356,1.73815822752988,0,0,0.0945348171640679,0,0.175669571386252,0.130979075497713,0.364295288292542,1.11235332835329,0.97364218096405,1.56716763569341,3.0580330919339,0.715471872916026,0,0.371457501329565,0,0,0.347140501607594,0,1.25849830862972,1.10047216776027,1.46296476575767,0.775250277507987,1.06729878806013,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0,2.43042584364528,0.267899184852239,0,0.112611480483322,0,0,0.732806975721629,0,0,0.872188104285069,1.49091585508596,1.01304409331664,0.529636723252875,1.72101972449288,1.06400514659507,1.12135520028461,0,4.68668341992604,0.311211035399766,0.404132016209064,0.163461903113459,0.151357427644931,0,0.234321431833797,0.624320153660641,0,0.747243402759005,0.352303495931295,0.161872944368132,0.561803226808994,0.61246251376468,0.491337269247072,0.413303124703062,3.56400857184616,1.7308685049499,0.910161361938026,3.59309070908119,0.168336113954066,0,0.277064115484183,0.438977620880838,3.0648779579902,0.300476117813194,0.453728732640084,0.358779271377724,1.92201649936711,1.05965950579781,0,1.03052529238439,1.28820270022815,0.744467425326359,0,0.68205903612839,1.00973509697646,1.01254888506529,1.13152239773168,0.355009592516614,1.10827308050404,0.508681776931463,1.73934767846967,0.272746120590835,0.286804595389004,0.121973706129595,0.132529768321485,0,0.207322110030741,0.252320850875628,0,0,1.92972281457866,1.38134921352481,1.85747171212792,4.33127689001751,0.354920400119532,0.337169380156203,0.482022059766964,0.441175890929576,0.217879444092406,0.71181185733329,0.269662616320329,1.17732879075208,0.38474715694639,2.21446636387394,2.80483547606892,0.4115740113314,0,1.26755034821831,0.982827216677626,0,0,0.122988438543114,0,0.658501712451753,0,0.904760751704678,0.370353780634118,1.95484983186195,1.03993478527958,1.44331342025273,0.463721619900307,0.469634776943287,1.01056513432752,0,0.380508304469197,0,0.858486162094873,0.738651018262192,0.234004265139238,0.594524649154913,1.87467667973554,1.17587489739202,1.41775097242386,0.806026704325635,0.871901815541886,0.383382679165211,0,0,0.207328115540772,0.720599767084807,0.25248486685276,0.063497894292169,1.52795370223311,0,0,0.102827492703324,1.20137223137567,1.14330573052231,0,0.43596006883328,0,0.387815147273333,3.57656445851882,0,1.59562869950922,2.08014873822732,0.514414748524284,0,0.799266537048298,0.285955987316295,2.17048642156577,0,0,1.42156779497018,0.791951872933429,0,2.61460037580088,0.399891964728228,1.2162378064119,1.00451418286425,0,0.239624855491583,1.14861935834114,0,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0.431255149719035,0.128343036279748,0.254094624222463,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0,0.12269149171914,2.00068208423871,0.813795071099207,0.623912584592421,4.46072471992904,2.05013139544115,0.35142424497814,0.902838299183157,9.09630016223939,4.1389228517002,0,0.553107505625109,1.04260337361699,0.587403472388222,1.02943027143257,0.413536052245775,1.72571360654893,0.853820462427555,0.909382714338778,9.98612637062982,2.72151263996712,2.97729369382532,0.153461973288062,3.92924132206303,2.30650468660262,1.53512174720011,1.12597744800525,7.42090332224955,0.771048469013278,1.77561725313127,0.0821271560138091,1.03850885836724,0.697262270759755,0,3.80962293576241,2.94659164594868,1.14814448164607,1.0925470080403,1.57349297951309,0.902399225814824,1.84836809050595,0,0,0.633309773357254,2.27466768141793,0,0,1.54227252690289,0.27094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| ||
|short_description=p@chr6:36653937..36653958,+ | |||
}} | }} |
Latest revision as of 01:10, 31 July 2015
Short description: | p@chr6:36653937..36653958, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:36653937..36653958, + |
Coexpression cluster: | C672_CD14_Smooth_Mesenchymal_Placental_Fibroblast_mesenchymal_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.39e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.39e-19 | 42 |
defensive cell | 2.49e-17 | 48 |
phagocyte | 2.49e-17 | 48 |
macrophage dendritic cell progenitor | 4.65e-14 | 61 |
monopoietic cell | 1.02e-13 | 59 |
monocyte | 1.02e-13 | 59 |
monoblast | 1.02e-13 | 59 |
promonocyte | 1.02e-13 | 59 |
multi fate stem cell | 2.19e-13 | 427 |
somatic stem cell | 1.07e-12 | 433 |
stem cell | 8.12e-12 | 441 |
granulocyte monocyte progenitor cell | 8.16e-12 | 67 |
myeloid lineage restricted progenitor cell | 3.84e-11 | 66 |
myeloid leukocyte | 4.18e-10 | 72 |
connective tissue cell | 5.47e-10 | 361 |
mesenchymal cell | 6.14e-10 | 354 |
motile cell | 4.80e-08 | 386 |
aortic smooth muscle cell | 9.48e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 9.41e-15 | 315 |
mesoderm-derived structure | 9.41e-15 | 315 |
presumptive mesoderm | 9.41e-15 | 315 |
musculoskeletal system | 6.61e-13 | 167 |
lateral plate mesoderm | 9.31e-13 | 203 |
bone marrow | 1.59e-10 | 76 |
skeletal element | 1.76e-10 | 90 |
bone element | 1.02e-09 | 82 |
skeletal system | 1.47e-09 | 100 |
connective tissue | 2.38e-09 | 371 |
immune system | 2.29e-08 | 93 |
smooth muscle tissue | 5.16e-08 | 15 |
hematopoietic system | 1.50e-07 | 98 |
blood island | 1.50e-07 | 98 |
hemolymphoid system | 2.47e-07 | 108 |
artery | 5.65e-07 | 42 |
arterial blood vessel | 5.65e-07 | 42 |
arterial system | 5.65e-07 | 42 |
blood vessel smooth muscle | 9.48e-07 | 10 |
arterial system smooth muscle | 9.48e-07 | 10 |
artery smooth muscle tissue | 9.48e-07 | 10 |
aorta smooth muscle tissue | 9.48e-07 | 10 |