FFCP PHASE1:Hg19::chr8:55370720..55370733,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=64321 | |EntrezGene=entrezgene:64321 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=18122 | |HGNC=HGNC:18122 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_BC140307_5end | |association_with_transcript=23bp_to_BC140307_5end | ||
|cluster_id=chr8:55370720..55370733,+ | |||
|coexpression_cluster_id=C4762 | |coexpression_cluster_id=C4762 | ||
|description=CAGE_peak_2_at_SOX17_5end | |description=CAGE_peak_2_at_SOX17_5end | ||
Revision as of 18:55, 31 July 2015
| Short description: | p2@SOX17 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_SOX17_5end |
| Coexpression cluster: | C4762_Endothelial_Wilms_mature_Renal_endometrioid_Smooth_Lymphatic |
| Association with transcript: | 23bp_to_BC140307_5end |
| EntrezGene: | 64321 |
| HGNC: | 18122 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p2@SOX17 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 2.90e-57 | 121 |
| endothelial cell of vascular tree | 5.15e-54 | 24 |
| vascular associated smooth muscle cell | 5.98e-51 | 32 |
| endothelial cell | 5.84e-50 | 36 |
| blood vessel endothelial cell | 1.09e-42 | 18 |
| embryonic blood vessel endothelial progenitor cell | 1.09e-42 | 18 |
| meso-epithelial cell | 1.48e-38 | 45 |
| smooth muscle cell | 3.31e-36 | 43 |
| smooth muscle myoblast | 3.31e-36 | 43 |
| muscle cell | 6.58e-32 | 55 |
Showing 1 to 10 of 38 entries
| Ontology term | p-value | n |
|---|---|---|
| vessel | 6.16e-106 | 68 |
| epithelial tube open at both ends | 4.37e-99 | 59 |
| blood vessel | 4.37e-99 | 59 |
| blood vasculature | 4.37e-99 | 59 |
| vascular cord | 4.37e-99 | 59 |
| splanchnic layer of lateral plate mesoderm | 2.38e-91 | 83 |
| vasculature | 8.66e-91 | 78 |
| vascular system | 8.66e-91 | 78 |
| artery | 6.62e-84 | 42 |
| arterial blood vessel | 6.62e-84 | 42 |
Showing 1 to 10 of 61 entries
