FFCP PHASE1:Hg19::chr9:136739422..136739457,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:136739422..136739457,+ | |||
|coexpression_cluster_id=C194 | |||
|description=CAGE_peak_at_chr9:136739422..136739457,+ | |description=CAGE_peak_at_chr9:136739422..136739457,+ | ||
|id=chr9:136739422..136739457,+ | |id=chr9:136739422..136739457,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.58e-29!254;CL:0002076!1.50e-20!43;CL:0000223!1.87e-14!59;CL:0002368!6.31e-10!13;CL:0000076!1.45e-08!62;CL:0002327!1.42e-07!4;CL:0002202!2.10e-07!9;CL:0002632!2.10e-07!9;CL:0002251!2.43e-07!21;CL:0002541!7.46e-07!3 | |ontology_enrichment_celltype=CL:0000066!5.58e-29!254;CL:0002076!1.50e-20!43;CL:0000223!1.87e-14!59;CL:0002368!6.31e-10!13;CL:0000076!1.45e-08!62;CL:0002327!1.42e-07!4;CL:0002202!2.10e-07!9;CL:0002632!2.10e-07!9;CL:0002251!2.43e-07!21;CL:0002541!7.46e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.64e-15;19!CL:0002251;6.27e-14;20!CL:0002541;1.77e-11;3!CL:0002623;1.77e-11;3!CL:0002076;8.66e-09;42!CL:0002537;1.32e-07;5!CL:0000622;3.13e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.96e-15,19;CL:0002076,5.45e-14,42;CL:0002251,6.43e-14,20;CL:0000223,4.07e-12,58;CL:0002541,9.32e-12,3;CL:0002623,2.08e-11,3;CL:0002537,1.28e-07,5;CL:0000622,3.45e-07,5;CL:0000066,5.81e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.37e-09;1 | |||
|ontology_enrichment_disease=DOID:305!1.70e-21!106;DOID:1749!2.17e-17!14;DOID:0050687!2.29e-17!143;DOID:162!3.91e-11!235;DOID:14566!1.33e-10!239;DOID:5093!6.08e-09!4;DOID:1612!6.08e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:178;1.37e-09;1!DOID:326;1.37e-09;1!DOID:3978;1.37e-09;1!DOID:3394;1.37e-09;1!DOID:5844;1.37e-09;1!DOID:5093;2.16e-09;4!DOID:1612;2.16e-09;4!DOID:3151;3.12e-09;1!DOID:3149;3.12e-09;1!DOID:7;4.74e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:178,1.56e-09,1;DOID:326,1.56e-09,1;DOID:3978,1.56e-09,1;DOID:3394,1.56e-09,1;DOID:5844,1.56e-09,1;DOID:7,1.70e-09,39;DOID:5093,2.17e-09,4;DOID:1612,2.17e-09,4;DOID:3151,3.00e-09,1;DOID:3149,3.00e-09,1;DOID:305,8.50e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.74e-16!72;UBERON:0005631!3.26e-15!14;UBERON:0000158!3.26e-15!14;UBERON:0000065!6.58e-15!53;UBERON:0000072!6.61e-14!46;UBERON:0008947!2.43e-13!38;UBERON:0003258!2.43e-13!38;UBERON:0001737!1.47e-12!9;UBERON:0004119!5.21e-12!169;UBERON:0000925!5.21e-12!169;UBERON:0006595!5.21e-12!169;UBERON:0003729!6.61e-10!5;UBERON:0003124!6.82e-10!7;UBERON:0003100!1.03e-09!41;UBERON:0004175!1.87e-09!25;UBERON:0000478!1.95e-09!24;UBERON:0001557!2.00e-09!19;UBERON:0005153!4.77e-09!37;UBERON:0003343!1.67e-08!4;UBERON:0004785!1.67e-08!4;UBERON:0000995!2.71e-08!21;UBERON:0001007!2.98e-08!155;UBERON:0001555!2.98e-08!155;UBERON:0007026!2.98e-08!155;UBERON:0000077!4.88e-08!130;UBERON:0005795!8.34e-08!22;UBERON:0003975!8.34e-08!22;UBERON:0001911!1.42e-07!4;UBERON:0005333!1.42e-07!4;UBERON:0008425!1.42e-07!4;UBERON:0005311!1.42e-07!4;UBERON:0000305!4.40e-07!7;UBERON:0005156!5.61e-07!59;UBERON:0000990!5.61e-07!59;UBERON:0000476!7.46e-07!3;UBERON:0000920!7.46e-07!3 | |ontology_enrichment_uberon=UBERON:0001004!1.74e-16!72;UBERON:0005631!3.26e-15!14;UBERON:0000158!3.26e-15!14;UBERON:0000065!6.58e-15!53;UBERON:0000072!6.61e-14!46;UBERON:0008947!2.43e-13!38;UBERON:0003258!2.43e-13!38;UBERON:0001737!1.47e-12!9;UBERON:0004119!5.21e-12!169;UBERON:0000925!5.21e-12!169;UBERON:0006595!5.21e-12!169;UBERON:0003729!6.61e-10!5;UBERON:0003124!6.82e-10!7;UBERON:0003100!1.03e-09!41;UBERON:0004175!1.87e-09!25;UBERON:0000478!1.95e-09!24;UBERON:0001557!2.00e-09!19;UBERON:0005153!4.77e-09!37;UBERON:0003343!1.67e-08!4;UBERON:0004785!1.67e-08!4;UBERON:0000995!2.71e-08!21;UBERON:0001007!2.98e-08!155;UBERON:0001555!2.98e-08!155;UBERON:0007026!2.98e-08!155;UBERON:0000077!4.88e-08!130;UBERON:0005795!8.34e-08!22;UBERON:0003975!8.34e-08!22;UBERON:0001911!1.42e-07!4;UBERON:0005333!1.42e-07!4;UBERON:0008425!1.42e-07!4;UBERON:0005311!1.42e-07!4;UBERON:0000305!4.40e-07!7;UBERON:0005156!5.61e-07!59;UBERON:0000990!5.61e-07!59;UBERON:0000476!7.46e-07!3;UBERON:0000920!7.46e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.01e-20;10!UBERON:0000158;5.01e-20;10!UBERON:0003343;1.39e-18;4!UBERON:0004785;1.39e-18;4!UBERON:0000478;8.32e-16;24!UBERON:0000974;1.39e-12;6!UBERON:0003124;1.77e-11;3!UBERON:0000920;1.77e-11;3!UBERON:0000305;4.10e-11;7!UBERON:0000161;2.50e-10;19!UBERON:0000166;2.50e-10;19!UBERON:0000165;5.99e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.91e-20,14;UBERON:0000158,1.91e-20,14;UBERON:0003343,1.20e-18,4;UBERON:0004785,1.20e-18,4;UBERON:0000478,7.44e-16,24;UBERON:0000920,9.32e-12,3;UBERON:0003124,4.47e-11,7;UBERON:0000305,5.13e-11,7;UBERON:0004871,1.06e-09,8;UBERON:0000166,6.82e-09,22;UBERON:0004923,1.40e-08,66;UBERON:0000974,8.95e-08,10;UBERON:0001004,2.64e-07,74 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.505754070234305,0,0.330881918197182,1.08939722046203,0.237270619111097,0.674156540800822,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0.439001141634502,0,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,6.3216351836742,13.735778593518,0,0,0,0.93733833986777,0.16798212819886,0.425325291727159,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0.356128142586949,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,1.34060455107157,0,0.0941438007767792,0.43050537267123,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,3.56357616999166,3.99308912729002,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0.520855522170466,0.524759999977174,0,0.455173793141999,1.77977555204936,1.18193840883968,0,0,0,0,0,0,0,0,0,0.10893846351899,0.975966209950223,0.0769502585037971,0,0,0.987334088507493,0.434589487688032,1.91400695839152,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76098157038881,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,1.21491816834592,0.293977192243133,0.0870592065804026,0.34945333648406,0,0.290268993867255,0.146178634172371,0.164230914106418,0,0,0,0,0,0,0.977756913674015,0,0,0,0,0,0,0,0,1.41416420770077,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0,0,2.1964690054889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0.959575986597226,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0.38582807654183,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,1.53360640352062,1.28400018965175,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,2.29972369751271,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0.549451649953598,0,0,0,0,0,0,0,0,0,0,0,1.19502933965765,1.38251932362818,0,0,0,0.423387050190929,0.4582137370881,0,0.955538938977433,0.671132590786754,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.505754070234305,0,0.330881918197182,1.08939722046203,0.237270619111097,0.674156540800822,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0.439001141634502,0,0.100528972411631,0.277765335475589,0,0,0,0,0,0,0,0,6.3216351836742,13.735778593518,0,0,0,0.93733833986777,0.16798212819886,0.425325291727159,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0.356128142586949,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,1.34060455107157,0,0.0941438007767792,0.43050537267123,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,3.56357616999166,3.99308912729002,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0.520855522170466,0.524759999977174,0,0.455173793141999,1.77977555204936,1.18193840883968,0,0,0,0,0,0,0,0,0,0.10893846351899,0.975966209950223,0.0769502585037971,0,0,0.987334088507493,0.434589487688032,1.91400695839152,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76098157038881,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,1.21491816834592,0.293977192243133,0.0870592065804026,0.34945333648406,0,0.290268993867255,0.146178634172371,0.164230914106418,0,0,0,0,0,0,0.977756913674015,0,0,0,0,0,0,0,0,1.41416420770077,0.135904206073614,0.313808538937,0,0,0,0,0,0,0,0,0,0,2.1964690054889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0.959575986597226,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0.38582807654183,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,1.53360640352062,1.28400018965175,0.115525666150338,0,0,0,0,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,2.29972369751271,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0.549451649953598,0,0,0,0,0,0,0,0,0,0,0,1.19502933965765,1.38251932362818,0,0,0,0.423387050190929,0.4582137370881,0,0.955538938977433,0.671132590786754,0,0,0,0,0,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p@chr9:136739422..136739457,+ | |short_description=p@chr9:136739422..136739457,+ | ||
}} | }} |
Latest revision as of 00:00, 1 August 2015
Short description: | p@chr9:136739422..136739457, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:136739422..136739457, + |
Coexpression cluster: | C194_MCF7_breast_prostate_Intestinal_diffuse_Wilms_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.96e-15 | 19 |
endo-epithelial cell | 5.45e-14 | 42 |
epithelial cell of alimentary canal | 6.43e-14 | 20 |
endodermal cell | 4.07e-12 | 58 |
chorionic membrane mesenchymal stem cell | 9.32e-12 | 3 |
acinar cell of salivary gland | 2.08e-11 | 3 |
amnion mesenchymal stem cell | 1.28e-07 | 5 |
acinar cell | 3.45e-07 | 5 |
epithelial cell | 5.81e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.91e-20 | 14 |
membranous layer | 1.91e-20 | 14 |
mucosa of oral region | 1.20e-18 | 4 |
respiratory system mucosa | 1.20e-18 | 4 |
extraembryonic structure | 7.44e-16 | 24 |
egg chorion | 9.32e-12 | 3 |
chorion | 4.47e-11 | 7 |
amnion | 5.13e-11 | 7 |
somatic layer of lateral plate mesoderm | 1.06e-09 | 8 |
oral opening | 6.82e-09 | 22 |
organ component layer | 1.40e-08 | 66 |
neck | 8.95e-08 | 10 |
respiratory system | 2.64e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 1.56e-09 | 1 |
ischemia | 1.56e-09 | 1 |
extrinsic cardiomyopathy | 1.56e-09 | 1 |
myocardial ischemia | 1.56e-09 | 1 |
myocardial infarction | 1.56e-09 | 1 |
disease of anatomical entity | 1.70e-09 | 39 |
thoracic cancer | 2.17e-09 | 4 |
breast cancer | 2.17e-09 | 4 |
skin squamous cell carcinoma | 3.00e-09 | 1 |
keratoacanthoma | 3.00e-09 | 1 |
carcinoma | 8.50e-09 | 106 |