FFCP PHASE1:Mm9::chr7:26540490..26540493,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=366|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:26540490..26540493,+|id=chr7:26540490..26540493,+|ontology_enrichment_celltype=CL:0000063!2.21e-15!66;CL:0002563!1.51e-13!9;CL:0002251!1.51e-13!9;CL:0000838!5.17e-13!12;CL:0000084!4.17e-12!11;CL:0000827!4.17e-12!11;CL:0000542!8.69e-12!13;CL:0000051!8.69e-12!13;CL:0000144!6.06e-11!121;CL:0000012!6.06e-11!121;CL:0000988!8.94e-11!32;CL:0002032!8.94e-11!32;CL:0000037!8.94e-11!32;CL:0000566!8.94e-11!32;CL:0000837!8.94e-11!32;CL:0000738!2.76e-10!17;CL:0002087!2.76e-10!17;CL:0000791!2.88e-10!9;CL:0000789!2.88e-10!9;CL:0002420!2.88e-10!9;CL:0002419!2.88e-10!9;CL:0000790!2.88e-10!9;CL:0000239!4.40e-09!6;CL:0000677!4.40e-09!6;CL:0000212!4.40e-09!6;CL:0000584!4.40e-09!6;CL:0000624!5.65e-09!8;CL:0000066!5.82e-09!25;CL:0002371!6.46e-09!118;CL:0002076!8.77e-09!15;CL:0000548!1.26e-08!115;CL:0000004!1.26e-08!115;CL:0000255!1.26e-08!115;CL:0002031!1.73e-08!25;CL:0000075!1.25e-07!7;CL:0000223!1.77e-07!20;CL:0000034!2.33e-07!97;CL:0002320!4.69e-07!46;CL:0000134!4.69e-07!46|ontology_enrichment_celltype_v019_2=CL:0002563,5.53e-16,9;CL:0002251,5.53e-16,9;CL:0002250,4.82e-13,3;CL:0000223,3.33e-11,20;CL:0000213,1.63e-10,1;CL:0002078,1.63e-10,1;CL:0000115,1.63e-10,1;CL:0002262,1.63e-10,1;CL:1000398,1.63e-10,1;CL:0000815,6.88e-10,1;CL:0000792,6.88e-10,1;CL:0002076,9.79e-10,15;CL:0000066,5.60e-09,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003350!1.51e-13!9;UBERON:0004808!1.51e-13!9;UBERON:0001277!1.51e-13!9;UBERON:0000485!8.15e-13!11;UBERON:0001242!1.17e-08!13;UBERON:0000060!1.17e-08!13;UBERON:0001262!1.17e-08!13;UBERON:0004786!1.17e-08!13;UBERON:0000344!3.29e-07!15;UBERON:0002384!4.69e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0003350,5.53e-16,9;UBERON:0004808,5.53e-16,9;UBERON:0001277,5.53e-16,9;UBERON:0000485,3.77e-13,11;UBERON:0001242,3.50e-11,13;UBERON:0001262,3.50e-11,13;UBERON:0004786,3.50e-11,13;UBERON:0002394,1.63e-10,1;UBERON:0001281,1.63e-10,1;UBERON:0000353,1.63e-10,1;UBERON:0003497,1.63e-10,1;UBERON:0003909,1.63e-10,1;UBERON:0003928,1.63e-10,1;UBERON:0003835,1.63e-10,1;UBERON:0003513,1.63e-10,1;UBERON:0001280,1.63e-10,1;UBERON:0004647,1.63e-10,1;UBERON:0002294,1.63e-10,1;UBERON:0001173,1.63e-10,1;UBERON:0004912,1.63e-10,1;UBERON:0005171,1.63e-10,1;UBERON:0000344,9.79e-10,15|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,1.00727563147134,0.233612640595526,1.29123323441576,0.84473233291,0.468129052643987,0.171217968225505,0,0.856003649656029,0.437102012094987,0,0,0,0.157731082679119,0,0,0,0.0992909512008853,0.261199789138935,0,0,0.57423196411502,0,0.215471232685889,0,0,0,1.27006134691926,0,0,4.62162591602039,0.997407872150954,4.49172583777212,0,0,0.523523743973798,0,0,0.971020706062307,0,0,0,0,0,0,0,0,0,0.167782606057736,2.17608642603403,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0.220868540951614,0,0.0958454710182364,0,0,0,0,0,0,0,0,0.56276261003168,0,0,0,0,0,0.0755715601067855,6.66688324013859,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.508280908292259,0,0.457500602818626,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.772043721344145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327726629431476,0,0,1.50791283939272,0,0,0,0,0.117211686592203,0.163934945376675,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0,0.206386867963223,0,0,0,0,0.509935289981566,2.23922323717853,0.552799895217695,0,0,0,0,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0.258319646955462,0,0.117357238645754,0.2604087696879,0,0,0.288030006257865,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0.0962118416403295,0.233753804363138,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr7:26540490..26540493,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=366 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr7:26540490..26540493,+ | |||
|description=CAGE_peak_at_chr7:26540490..26540493,+ | |||
|id=chr7:26540490..26540493,+ | |||
|ontology_enrichment_celltype=CL:0000063!2.21e-15!66;CL:0002563!1.51e-13!9;CL:0002251!1.51e-13!9;CL:0000838!5.17e-13!12;CL:0000084!4.17e-12!11;CL:0000827!4.17e-12!11;CL:0000542!8.69e-12!13;CL:0000051!8.69e-12!13;CL:0000144!6.06e-11!121;CL:0000012!6.06e-11!121;CL:0000988!8.94e-11!32;CL:0002032!8.94e-11!32;CL:0000037!8.94e-11!32;CL:0000566!8.94e-11!32;CL:0000837!8.94e-11!32;CL:0000738!2.76e-10!17;CL:0002087!2.76e-10!17;CL:0000791!2.88e-10!9;CL:0000789!2.88e-10!9;CL:0002420!2.88e-10!9;CL:0002419!2.88e-10!9;CL:0000790!2.88e-10!9;CL:0000239!4.40e-09!6;CL:0000677!4.40e-09!6;CL:0000212!4.40e-09!6;CL:0000584!4.40e-09!6;CL:0000624!5.65e-09!8;CL:0000066!5.82e-09!25;CL:0002371!6.46e-09!118;CL:0002076!8.77e-09!15;CL:0000548!1.26e-08!115;CL:0000004!1.26e-08!115;CL:0000255!1.26e-08!115;CL:0002031!1.73e-08!25;CL:0000075!1.25e-07!7;CL:0000223!1.77e-07!20;CL:0000034!2.33e-07!97;CL:0002320!4.69e-07!46;CL:0000134!4.69e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,5.53e-16,9;CL:0002251,5.53e-16,9;CL:0002250,4.82e-13,3;CL:0000223,3.33e-11,20;CL:0000213,1.63e-10,1;CL:0002078,1.63e-10,1;CL:0000115,1.63e-10,1;CL:0002262,1.63e-10,1;CL:1000398,1.63e-10,1;CL:0000815,6.88e-10,1;CL:0000792,6.88e-10,1;CL:0002076,9.79e-10,15;CL:0000066,5.60e-09,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003350!1.51e-13!9;UBERON:0004808!1.51e-13!9;UBERON:0001277!1.51e-13!9;UBERON:0000485!8.15e-13!11;UBERON:0001242!1.17e-08!13;UBERON:0000060!1.17e-08!13;UBERON:0001262!1.17e-08!13;UBERON:0004786!1.17e-08!13;UBERON:0000344!3.29e-07!15;UBERON:0002384!4.69e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,5.53e-16,9;UBERON:0004808,5.53e-16,9;UBERON:0001277,5.53e-16,9;UBERON:0000485,3.77e-13,11;UBERON:0001242,3.50e-11,13;UBERON:0001262,3.50e-11,13;UBERON:0004786,3.50e-11,13;UBERON:0002394,1.63e-10,1;UBERON:0001281,1.63e-10,1;UBERON:0000353,1.63e-10,1;UBERON:0003497,1.63e-10,1;UBERON:0003909,1.63e-10,1;UBERON:0003928,1.63e-10,1;UBERON:0003835,1.63e-10,1;UBERON:0003513,1.63e-10,1;UBERON:0001280,1.63e-10,1;UBERON:0004647,1.63e-10,1;UBERON:0002294,1.63e-10,1;UBERON:0001173,1.63e-10,1;UBERON:0004912,1.63e-10,1;UBERON:0005171,1.63e-10,1;UBERON:0000344,9.79e-10,15 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,1.00727563147134,0.233612640595526,1.29123323441576,0.84473233291,0.468129052643987,0.171217968225505,0,0.856003649656029,0.437102012094987,0,0,0,0.157731082679119,0,0,0,0.0992909512008853,0.261199789138935,0,0,0.57423196411502,0,0.215471232685889,0,0,0,1.27006134691926,0,0,4.62162591602039,0.997407872150954,4.49172583777212,0,0,0.523523743973798,0,0,0.971020706062307,0,0,0,0,0,0,0,0,0,0.167782606057736,2.17608642603403,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0.220868540951614,0,0.0958454710182364,0,0,0,0,0,0,0,0,0.56276261003168,0,0,0,0,0,0.0755715601067855,6.66688324013859,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.508280908292259,0,0.457500602818626,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.772043721344145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327726629431476,0,0,1.50791283939272,0,0,0,0,0.117211686592203,0.163934945376675,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0,0.206386867963223,0,0,0,0,0.509935289981566,2.23922323717853,0.552799895217695,0,0,0,0,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0.258319646955462,0,0.117357238645754,0.2604087696879,0,0,0.288030006257865,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0.0962118416403295,0.233753804363138,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:26540490..26540493,+ | |||
}} |
Latest revision as of 20:55, 4 August 2015
Short description: | p@chr7:26540490..26540493, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:26540490..26540493, + |
Coexpression cluster: | MCL_coexpression_mm9:366 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 5.53e-16 | 9 |
epithelial cell of alimentary canal | 5.53e-16 | 9 |
intestinal crypt stem cell | 4.82e-13 | 3 |
endodermal cell | 3.33e-11 | 20 |
lining cell | 1.63e-10 | 1 |
meso-epithelial cell | 1.63e-10 | 1 |
endothelial cell | 1.63e-10 | 1 |
endothelial cell of sinusoid | 1.63e-10 | 1 |
endothelial cell of hepatic sinusoid | 1.63e-10 | 1 |
regulatory T cell | 6.88e-10 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.88e-10 | 1 |
endo-epithelial cell | 9.79e-10 | 15 |
epithelial cell | 5.60e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 5.53e-16 | 9 |
gastrointestinal system epithelium | 5.53e-16 | 9 |
intestinal epithelium | 5.53e-16 | 9 |
simple columnar epithelium | 3.77e-13 | 11 |
intestinal mucosa | 3.50e-11 | 13 |
wall of intestine | 3.50e-11 | 13 |
gastrointestinal system mucosa | 3.50e-11 | 13 |
bile duct | 1.63e-10 | 1 |
hepatic sinusoid | 1.63e-10 | 1 |
parenchyma | 1.63e-10 | 1 |
abdomen blood vessel | 1.63e-10 | 1 |
sinusoid | 1.63e-10 | 1 |
digestive system duct | 1.63e-10 | 1 |
abdominal segment blood vessel | 1.63e-10 | 1 |
trunk blood vessel | 1.63e-10 | 1 |
liver parenchyma | 1.63e-10 | 1 |
liver lobule | 1.63e-10 | 1 |
biliary system | 1.63e-10 | 1 |
biliary tree | 1.63e-10 | 1 |
biliary bud | 1.63e-10 | 1 |
hepatic duct | 1.63e-10 | 1 |
mucosa | 9.79e-10 | 15 |