FFCP PHASE1:Mm9::chr5:122287292..122287303,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=441 | |MCL_coexpression_id=441 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:122287292..122287303,+ | |||
|description=CAGE_peak_at_chr5:122287292..122287303,+ | |description=CAGE_peak_at_chr5:122287292..122287303,+ | ||
|id=chr5:122287292..122287303,+ | |id=chr5:122287292..122287303,+ | ||
|ontology_enrichment_celltype=CL:0000063!9.13e-16!66;CL:0000988!2.11e-12!32;CL:0002032!2.11e-12!32;CL:0000037!2.11e-12!32;CL:0000566!2.11e-12!32;CL:0000837!2.11e-12!32;CL:0002563!4.25e-11!9;CL:0002251!4.25e-11!9;CL:0002031!1.59e-09!25;CL:0000624!5.96e-09!8;CL:0000144!6.06e-09!121;CL:0000012!6.06e-09!121;CL:0000075!6.59e-09!7;CL:0002320!1.30e-08!46;CL:0000134!1.30e-08!46;CL:0000066!3.33e-08!25;CL:0000239!4.35e-08!6;CL:0000677!4.35e-08!6;CL:0000212!4.35e-08!6;CL:0000584!4.35e-08!6;CL:0000548!6.32e-08!115;CL:0000004!6.32e-08!115;CL:0000255!6.32e-08!115;CL:0000791!9.87e-08!9;CL:0000789!9.87e-08!9;CL:0002420!9.87e-08!9;CL:0002419!9.87e-08!9;CL:0000790!9.87e-08!9;CL:0000219!1.41e-07!54;CL:0002371!2.00e-07!118;CL:0000049!2.14e-07!19;CL:0000893!4.62e-07!6;CL:0002489!4.62e-07!6;CL:0000898!4.62e-07!6;CL:0000809!4.62e-07!6;CL:0000810!4.62e-07!6;CL:0000895!4.62e-07!6;CL:0000808!4.62e-07!6;CL:0000894!4.62e-07!6;CL:0000806!4.62e-07!6;CL:0000807!4.62e-07!6;CL:0000805!4.62e-07!6;CL:0002425!4.62e-07!6;CL:0002436!4.62e-07!6;CL:0002427!4.62e-07!6;CL:0002428!4.62e-07!6;CL:0002429!4.62e-07!6;CL:0002433!4.62e-07!6;CL:0002431!4.62e-07!6;CL:0002432!4.62e-07!6;CL:0000838!5.74e-07!12;CL:0000223!6.97e-07!20;CL:0002076!7.10e-07!15 | |ontology_enrichment_celltype=CL:0000063!9.13e-16!66;CL:0000988!2.11e-12!32;CL:0002032!2.11e-12!32;CL:0000037!2.11e-12!32;CL:0000566!2.11e-12!32;CL:0000837!2.11e-12!32;CL:0002563!4.25e-11!9;CL:0002251!4.25e-11!9;CL:0002031!1.59e-09!25;CL:0000624!5.96e-09!8;CL:0000144!6.06e-09!121;CL:0000012!6.06e-09!121;CL:0000075!6.59e-09!7;CL:0002320!1.30e-08!46;CL:0000134!1.30e-08!46;CL:0000066!3.33e-08!25;CL:0000239!4.35e-08!6;CL:0000677!4.35e-08!6;CL:0000212!4.35e-08!6;CL:0000584!4.35e-08!6;CL:0000548!6.32e-08!115;CL:0000004!6.32e-08!115;CL:0000255!6.32e-08!115;CL:0000791!9.87e-08!9;CL:0000789!9.87e-08!9;CL:0002420!9.87e-08!9;CL:0002419!9.87e-08!9;CL:0000790!9.87e-08!9;CL:0000219!1.41e-07!54;CL:0002371!2.00e-07!118;CL:0000049!2.14e-07!19;CL:0000893!4.62e-07!6;CL:0002489!4.62e-07!6;CL:0000898!4.62e-07!6;CL:0000809!4.62e-07!6;CL:0000810!4.62e-07!6;CL:0000895!4.62e-07!6;CL:0000808!4.62e-07!6;CL:0000894!4.62e-07!6;CL:0000806!4.62e-07!6;CL:0000807!4.62e-07!6;CL:0000805!4.62e-07!6;CL:0002425!4.62e-07!6;CL:0002436!4.62e-07!6;CL:0002427!4.62e-07!6;CL:0002428!4.62e-07!6;CL:0002429!4.62e-07!6;CL:0002433!4.62e-07!6;CL:0002431!4.62e-07!6;CL:0002432!4.62e-07!6;CL:0000838!5.74e-07!12;CL:0000223!6.97e-07!20;CL:0002076!7.10e-07!15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.12e-18,6;CL:0000677,1.12e-18,6;CL:0000584,1.12e-18,6;CL:0000988,4.78e-18,32;CL:0002032,4.78e-18,32;CL:0000037,4.78e-18,32;CL:0000837,4.78e-18,32;CL:0002563,1.08e-17,9;CL:0002251,1.08e-17,9;CL:0000075,5.39e-16,7;CL:0002320,2.54e-14,46;CL:0000134,2.54e-14,46;CL:0000049,9.12e-14,19;CL:0002031,2.26e-13,25;CL:0000763,1.00e-12,16;CL:0000219,6.91e-12,54;CL:0000066,1.18e-10,25;CL:0000223,1.78e-10,20;CL:0002076,1.96e-10,15;CL:0000839,1.66e-08,13;CL:0000050,3.87e-08,9;CL:0000723,2.30e-07,91;CL:0000048,2.30e-07,91;CL:0000764,3.23e-07,3;CL:0000765,3.23e-07,3;CL:0000038,3.23e-07,3;CL:0000547,3.23e-07,3;CL:0000034,9.20e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2=DOID:2531,3.23e-07,3;DOID:0060083,3.23e-07,3;DOID:1240,3.23e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003350!4.25e-11!9;UBERON:0004808!4.25e-11!9;UBERON:0001277!4.25e-11!9;UBERON:0000485!1.46e-10!11;UBERON:0002384!1.30e-08!46;UBERON:0001242!6.93e-07!13;UBERON:0000060!6.93e-07!13;UBERON:0001262!6.93e-07!13;UBERON:0004786!6.93e-07!13 | |ontology_enrichment_uberon=UBERON:0003350!4.25e-11!9;UBERON:0004808!4.25e-11!9;UBERON:0001277!4.25e-11!9;UBERON:0000485!1.46e-10!11;UBERON:0002384!1.30e-08!46;UBERON:0001242!6.93e-07!13;UBERON:0000060!6.93e-07!13;UBERON:0001262!6.93e-07!13;UBERON:0004786!6.93e-07!13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.08e-17,9;UBERON:0004808,1.08e-17,9;UBERON:0001277,1.08e-17,9;UBERON:0000485,2.13e-14,11;UBERON:0002384,2.54e-14,46;UBERON:0001242,4.11e-12,13;UBERON:0001262,4.11e-12,13;UBERON:0004786,4.11e-12,13;UBERON:0000344,1.96e-10,15 | |||
|phase1_expression=0,2.44282785347553,2.27499619694768,3.62957053568196,4.00716583957078,1.17515490338323,0.233612640595526,0.258246646883153,3.801295498095,3.97909694747389,0.34243593645101,0.558405112967355,0.513602189793617,0.0874204024189974,0,0.404950534779652,0,1.57731082679119,1.09691546884591,0.84877930359606,0,0,0,0,0,2.29692785646008,0,0.646413698057667,0,0,0,5.71527606113668,2.46025915033828,0,0.577703239502549,0.332469290716985,3.06254034393554,0,0,0,0,0,0.971020706062307,0,0,0,0,0,0,0,0.139986421625363,0,2.34895648480831,1.45072428402269,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,5.50742528533188,0,0,0,0,0.448026887097336,0,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0.484875253135222,0,0,0,0,0.838705871541442,1.79970819298022,0.127070227073065,0,0,0,0,0.511430914660661,0,0,0,0,0,0.210441855886474,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40442637462647,1.02939162845886,0,0,0,0.180062061461015,0,0,0,0,0,0.116765342367169,0,0,0,0.146199987425332,0,0.134206418760372,0,0,0,0.264450566663544,0,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0,0,0,0.147610147979602,0,0.246794327843601,0,0,0,0,0,0.241177159752417,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0.167506257441816,0,0,0.157635144106191,0,0.159454768657487,0,0,0,3.01582567878545,0,0,0,0,0,0,0.504941854408746,0,0,0,0,0.222798674082394,0.283076530788832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0.16488625294148,0,0,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0,0,0.339956859987711,0.69975726161829,0.829199842826543,0,0,0,0,0,0.218362563746178,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0.0897138566094757,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197008964751127,0,0,0,0,0,0.214871054048298,0,0,0 | |phase1_expression=0,2.44282785347553,2.27499619694768,3.62957053568196,4.00716583957078,1.17515490338323,0.233612640595526,0.258246646883153,3.801295498095,3.97909694747389,0.34243593645101,0.558405112967355,0.513602189793617,0.0874204024189974,0,0.404950534779652,0,1.57731082679119,1.09691546884591,0.84877930359606,0,0,0,0,0,2.29692785646008,0,0.646413698057667,0,0,0,5.71527606113668,2.46025915033828,0,0.577703239502549,0.332469290716985,3.06254034393554,0,0,0,0,0,0.971020706062307,0,0,0,0,0,0,0,0.139986421625363,0,2.34895648480831,1.45072428402269,0,0.257259436035947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,5.50742528533188,0,0,0,0,0.448026887097336,0,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0.484875253135222,0,0,0,0,0.838705871541442,1.79970819298022,0.127070227073065,0,0,0,0,0.511430914660661,0,0,0,0,0,0.210441855886474,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40442637462647,1.02939162845886,0,0,0,0.180062061461015,0,0,0,0,0,0.116765342367169,0,0,0,0.146199987425332,0,0.134206418760372,0,0,0,0.264450566663544,0,0.232236671860439,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0,0,0,0.147610147979602,0,0.246794327843601,0,0,0,0,0,0.241177159752417,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0.167506257441816,0,0,0.157635144106191,0,0.159454768657487,0,0,0,3.01582567878545,0,0,0,0,0,0,0.504941854408746,0,0,0,0,0.222798674082394,0.283076530788832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0.16488625294148,0,0,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0,0,0.339956859987711,0.69975726161829,0.829199842826543,0,0,0,0,0,0.218362563746178,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0.0897138566094757,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197008964751127,0,0,0,0,0,0.214871054048298,0,0,0 | ||
|short_description=p@chr5:122287292..122287303,+ | |short_description=p@chr5:122287292..122287303,+ | ||
}} | }} |
Latest revision as of 05:11, 6 August 2015
Short description: | p@chr5:122287292..122287303, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:122287292..122287303, + |
Coexpression cluster: | MCL_coexpression_mm9:441 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.12e-18 | 6 |
gut absorptive cell | 1.12e-18 | 6 |
enterocyte | 1.12e-18 | 6 |
hematopoietic cell | 4.78e-18 | 32 |
hematopoietic oligopotent progenitor cell | 4.78e-18 | 32 |
hematopoietic stem cell | 4.78e-18 | 32 |
hematopoietic multipotent progenitor cell | 4.78e-18 | 32 |
intestinal epithelial cell | 1.08e-17 | 9 |
epithelial cell of alimentary canal | 1.08e-17 | 9 |
columnar/cuboidal epithelial cell | 5.39e-16 | 7 |
connective tissue cell | 2.54e-14 | 46 |
mesenchymal cell | 2.54e-14 | 46 |
common myeloid progenitor | 9.12e-14 | 19 |
hematopoietic lineage restricted progenitor cell | 2.26e-13 | 25 |
myeloid cell | 1.00e-12 | 16 |
motile cell | 6.91e-12 | 54 |
epithelial cell | 1.18e-10 | 25 |
endodermal cell | 1.78e-10 | 20 |
endo-epithelial cell | 1.96e-10 | 15 |
myeloid lineage restricted progenitor cell | 1.66e-08 | 13 |
megakaryocyte-erythroid progenitor cell | 3.87e-08 | 9 |
somatic stem cell | 2.30e-07 | 91 |
multi fate stem cell | 2.30e-07 | 91 |
erythroid lineage cell | 3.23e-07 | 3 |
erythroblast | 3.23e-07 | 3 |
erythroid progenitor cell | 3.23e-07 | 3 |
proerythroblast | 3.23e-07 | 3 |
stem cell | 9.20e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 1.08e-17 | 9 |
gastrointestinal system epithelium | 1.08e-17 | 9 |
intestinal epithelium | 1.08e-17 | 9 |
simple columnar epithelium | 2.13e-14 | 11 |
connective tissue | 2.54e-14 | 46 |
intestinal mucosa | 4.11e-12 | 13 |
wall of intestine | 4.11e-12 | 13 |
gastrointestinal system mucosa | 4.11e-12 | 13 |
mucosa | 1.96e-10 | 15 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.23e-07 | 3 |
immune system cancer | 3.23e-07 | 3 |
leukemia | 3.23e-07 | 3 |