FFCP PHASE1:Hg19::chr5:143550241..143550259,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:143550241..143550259,- to FFCP PHASE1:Hg19::chr5:143550241..143550259,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81555 | |EntrezGene=81555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24877 | |HGNC=24877 | ||
|TSSclassifier=strong | |||
|UniProt=Q969M3,E5RGR9 | |UniProt=Q969M3,E5RGR9 | ||
|association_with_transcript=-18bp_to_,18bp_to_ENST00000274496,ENST00000522203,NM_001024947,NM_030799,uc003lnk.3,uc003lnl.3,uc010jgl.2_5end | |||
|cluster_id=chr5:143550241..143550259,- | |||
|description=CAGE_peak_3_at_YIPF5_5end | |||
|id=chr5:143550241..143550259,- | |||
|ontology_enrichment_celltype=CL:0000055!2.93e-14!180;CL:0000192!3.40e-11!42;CL:0000514!3.40e-11!42;CL:0000057!7.66e-11!75;CL:0000359!9.31e-11!32;CL:0000680!2.07e-10!57;CL:0000056!2.07e-10!57;CL:0000355!2.07e-10!57;CL:0000187!2.08e-10!54;CL:0000393!2.22e-08!60;CL:0000211!2.22e-08!60;CL:0000183!4.89e-08!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.64e-11;32!CL:0000192;1.29e-09;43!CL:0000134;1.02e-07;55!CL:0002620;5.07e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.05e-13,43;CL:0000514,3.05e-13,43;CL:0000359,2.16e-12,32;CL:0000057,9.11e-12,76;CL:0000187,4.78e-11,55;CL:0000680,7.93e-11,58;CL:0000056,7.93e-11,58;CL:0000355,7.93e-11,58;CL:0000393,1.42e-09,61;CL:0000211,1.42e-09,61;CL:0002620,3.88e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;1.29e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.34e-15!365;UBERON:0000914!8.39e-15!83;UBERON:0002329!8.39e-15!83;UBERON:0003077!8.39e-15!83;UBERON:0003059!8.39e-15!83;UBERON:0007282!8.39e-15!83;UBERON:0009618!8.39e-15!83;UBERON:0007285!8.39e-15!83;UBERON:0004290!1.33e-12!70;UBERON:0000486!1.35e-11!82;UBERON:0000468!5.39e-11!659;UBERON:0001134!1.96e-10!61;UBERON:0002036!1.96e-10!61;UBERON:0003082!1.96e-10!61;UBERON:0000481!2.87e-10!347;UBERON:0002385!9.25e-10!63;UBERON:0001015!9.25e-10!63;UBERON:0000383!9.25e-10!63;UBERON:0001637!7.90e-09!42;UBERON:0003509!7.90e-09!42;UBERON:0004572!7.90e-09!42;UBERON:0003102!1.32e-08!95;UBERON:0000480!2.06e-08!626;UBERON:0000467!2.23e-08!625;UBERON:0002199!4.24e-08!45;UBERON:0002416!4.24e-08!45;UBERON:0002097!2.05e-07!40;UBERON:0004573!2.34e-07!33;UBERON:0004571!2.34e-07!33;UBERON:0000483!2.54e-07!309;UBERON:0000119!3.63e-07!312;UBERON:0000923!4.49e-07!604;UBERON:0005291!4.49e-07!604;UBERON:0006598!4.49e-07!604;UBERON:0002532!4.49e-07!604;UBERON:0002050!4.86e-07!605;UBERON:0005423!4.86e-07!605;UBERON:0000922!7.50e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.45e-07;42!UBERON:0003509;2.45e-07;42!UBERON:0004572;2.45e-07;42!UBERON:0004573;3.06e-07;33!UBERON:0004571;3.06e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003077,1.34e-13,72;UBERON:0007285,1.34e-13,72;UBERON:0007524,3.35e-13,73;UBERON:0002329,3.85e-13,71;UBERON:0003059,3.85e-13,71;UBERON:0007282,3.85e-13,71;UBERON:0004290,3.85e-13,71;UBERON:0009618,3.85e-13,71;UBERON:0007503,1.19e-10,78;UBERON:0001134,1.25e-10,62;UBERON:0002036,1.25e-10,62;UBERON:0003082,1.25e-10,62;UBERON:0000486,1.80e-10,83;UBERON:0002385,6.44e-10,64;UBERON:0001015,6.44e-10,64;UBERON:0000383,6.44e-10,64;UBERON:0001637,1.07e-09,42;UBERON:0003509,1.07e-09,42;UBERON:0004572,1.07e-09,42;UBERON:0002097,7.46e-08,41;UBERON:0004573,1.21e-07,33;UBERON:0004571,1.21e-07,33;UBERON:0002199,1.57e-07,46;UBERON:0002416,1.57e-07,46;UBERON:0003102,2.02e-07,99 | |||
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|short_description=p3@YIPF5 | |||
}} | }} |
Latest revision as of 18:40, 15 September 2015
Short description: | p3@YIPF5 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_YIPF5_5end |
Coexpression cluster: | NA |
Association with transcript: | -18bp_to_, 18bp_to_ENST00000274496, ENST00000522203, NM_001024947, NM_030799, uc003lnk.3, uc003lnl.3, uc010jgl.2_5end |
EntrezGene: | YIPF5 |
HGNC: | 24877 |
UniProt: | Q969M3E5RGR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.05e-13 | 43 |
smooth muscle myoblast | 3.05e-13 | 43 |
vascular associated smooth muscle cell | 2.16e-12 | 32 |
fibroblast | 9.11e-12 | 76 |
muscle cell | 4.78e-11 | 55 |
muscle precursor cell | 7.93e-11 | 58 |
myoblast | 7.93e-11 | 58 |
multi-potent skeletal muscle stem cell | 7.93e-11 | 58 |
electrically responsive cell | 1.42e-09 | 61 |
electrically active cell | 1.42e-09 | 61 |
skin fibroblast | 3.88e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
paraxial mesoderm | 1.34e-13 | 72 |
presumptive paraxial mesoderm | 1.34e-13 | 72 |
dense mesenchyme tissue | 3.35e-13 | 73 |
somite | 3.85e-13 | 71 |
presomitic mesoderm | 3.85e-13 | 71 |
presumptive segmental plate | 3.85e-13 | 71 |
dermomyotome | 3.85e-13 | 71 |
trunk paraxial mesoderm | 3.85e-13 | 71 |
epithelial vesicle | 1.19e-10 | 78 |
skeletal muscle tissue | 1.25e-10 | 62 |
striated muscle tissue | 1.25e-10 | 62 |
myotome | 1.25e-10 | 62 |
multilaminar epithelium | 1.80e-10 | 83 |
muscle tissue | 6.44e-10 | 64 |
musculature | 6.44e-10 | 64 |
musculature of body | 6.44e-10 | 64 |
artery | 1.07e-09 | 42 |
arterial blood vessel | 1.07e-09 | 42 |
arterial system | 1.07e-09 | 42 |
skin of body | 7.46e-08 | 41 |
systemic artery | 1.21e-07 | 33 |
systemic arterial system | 1.21e-07 | 33 |
integument | 1.57e-07 | 46 |
integumental system | 1.57e-07 | 46 |
surface structure | 2.02e-07 | 99 |