FFCP PHASE1:Hg19::chr1:22204962..22204969,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:22204962..22204969,-
|short_description=p4@HSPG2
|description=CAGE_peak_4_at_HSPG2_5end
|association_with_transcript=-270bp_to_S76436_5end
|EntrezGene=333...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3339 | |EntrezGene=3339 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5273 | |HGNC=5273 | ||
|TSSclassifier=strong | |||
|UniProt=P98160 | |UniProt=P98160 | ||
|association_with_transcript=-270bp_to_S76436_5end | |||
|cluster_id=chr1:22204962..22204969,- | |||
|coexpression_cluster_id=C547 | |||
|description=CAGE_peak_4_at_HSPG2_5end | |||
|id=chr1:22204962..22204969,- | |||
|ontology_enrichment_celltype=CL:0000222!2.44e-16!119;CL:0002139!7.21e-12!24;CL:0002078!9.09e-12!44;CL:0000213!1.43e-11!57;CL:0000215!1.43e-11!57;CL:0000115!3.39e-11!35;CL:0000055!1.17e-09!180;CL:0000220!6.51e-09!246;CL:0002321!7.02e-09!248;CL:1000413!3.25e-08!9;CL:0000071!5.05e-08!18;CL:0002546!5.05e-08!18;CL:0000057!2.75e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.36e-25;36!CL:0002139;5.85e-22;24!CL:0002078;1.82e-17;45!CL:0000071;2.08e-16;18!CL:1000413;4.05e-14;9!CL:0000213;5.64e-11;58!CL:0000215;5.64e-11;58!CL:0002188;2.51e-09;5!CL:0002548;2.34e-07;6!CL:0002544;2.94e-07;6!CL:0000153;3.66e-07;9!CL:0000447;3.66e-07;9!CL:0002138;4.07e-07;6!CL:0002262;6.62e-07;2!CL:1000398;6.62e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.09e-28,36;CL:0002078,2.21e-26,45;CL:0002139,2.11e-22,24;CL:0000213,4.82e-21,58;CL:0000215,4.82e-21,58;CL:0000222,1.34e-16,121;CL:0000071,1.58e-16,18;CL:0002546,1.58e-16,18;CL:1000413,2.36e-14,9;CL:0002188,3.69e-09,5;CL:0002548,1.54e-07,6;CL:0005020,1.86e-07,6;CL:0002138,1.86e-07,6;CL:0005022,1.86e-07,6;CL:0002544,1.99e-07,6;CL:0000153,4.15e-07,9;CL:0000447,4.15e-07,9;CL:0002262,5.48e-07,2;CL:1000398,5.48e-07,2;CL:0002545,8.60e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;2.08e-16;18!CL:0005022;4.07e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!1.79e-15!84;UBERON:0000055!6.31e-14!69;UBERON:0003914!8.45e-13!118;UBERON:0001981!4.55e-12!60;UBERON:0007500!4.55e-12!60;UBERON:0004537!4.55e-12!60;UBERON:0006965!4.55e-12!60;UBERON:0002049!2.03e-11!79;UBERON:0007798!2.03e-11!79;UBERON:0001009!6.27e-10!113;UBERON:0004535!1.74e-09!110;UBERON:0006914!2.24e-09!25;UBERON:0000490!3.38e-09!138;UBERON:0001637!4.31e-09!42;UBERON:0003509!4.31e-09!42;UBERON:0004572!4.31e-09!42;UBERON:0000487!9.29e-09!22;UBERON:0003915!3.25e-08!9;UBERON:0004700!3.25e-08!9;UBERON:0001917!3.25e-08!9;UBERON:0001986!5.05e-08!18;UBERON:0004638!5.05e-08!18;UBERON:0004852!5.05e-08!18;UBERON:0005256!7.23e-08!143;UBERON:0002100!1.88e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0006914;2.91e-18;25!UBERON:0004638;2.08e-16;18!UBERON:0001986;2.08e-16;18!UBERON:0004852;2.08e-16;18!UBERON:0000487;1.20e-15;22!UBERON:0003915;4.05e-14;9!UBERON:0004700;4.05e-14;9!UBERON:0001917;4.05e-14;9!UBERON:0000055;1.84e-09;65!UBERON:0001637;2.29e-09;42!UBERON:0003509;2.29e-09;42!UBERON:0004572;2.29e-09;42!UBERON:0000490;5.88e-09;33!UBERON:0007500;1.74e-08;56!UBERON:0001981;1.74e-08;56!UBERON:0004537;1.74e-08;56!UBERON:0004457;3.66e-07;9!UBERON:0000042;3.66e-07;9!UBERON:0002049;6.61e-07;75!UBERON:0007798;6.61e-07;75!UBERON:0001281;6.62e-07;2!UBERON:0003497;6.62e-07;2!UBERON:0003909;6.62e-07;2!UBERON:0003835;6.62e-07;2!UBERON:0003914;7.02e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006914,2.05e-18,25;UBERON:0004872,8.76e-17,83;UBERON:0000055,9.39e-17,68;UBERON:0004638,1.58e-16,18;UBERON:0001986,1.58e-16,18;UBERON:0004852,1.58e-16,18;UBERON:0000487,9.52e-16,22;UBERON:0003915,2.36e-14,9;UBERON:0004700,2.36e-14,9;UBERON:0001917,2.36e-14,9;UBERON:0003914,4.60e-14,117;UBERON:0002049,8.90e-14,78;UBERON:0007798,8.90e-14,78;UBERON:0007500,2.25e-13,59;UBERON:0001981,2.25e-13,59;UBERON:0004537,2.25e-13,59;UBERON:0006965,2.25e-13,59;UBERON:0004535,2.65e-13,109;UBERON:0001009,9.61e-13,112;UBERON:0001637,2.70e-09,42;UBERON:0003509,2.70e-09,42;UBERON:0004572,2.70e-09,42;UBERON:0004876,1.50e-08,11;UBERON:0004111,5.26e-07,240;UBERON:0001281,5.48e-07,2;UBERON:0003497,5.48e-07,2;UBERON:0003909,5.48e-07,2;UBERON:0003835,5.48e-07,2;UBERON:0005800,8.60e-07,2;UBERON:0001515,8.60e-07,2;UBERON:0003513,9.55e-07,7 | |||
|phase1_expression=0.181678379270557,2.78330681058278,0.563817616383885,2.00146596706261,2.23480547213644,0.872338524100369,0,0,1.30592814099919,0.491467873003018,2.09340350391728,0.436882744260345,0.791300934685361,0.247532705920093,0.994192127183747,0,0,0,0.975865597581014,0,0.204000691244253,0.313454721478088,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,0.722878304769133,1.00267582127178,2.462390822334,0,2.43317435151318,0,0.665188192387692,0,0.196468613246569,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,1.73570250803797,1.13061588384802,5.87299210693868,10.7296036356626,1.46296476575767,0.775250277507987,0.35576626268671,1.67360306382335,3.22263453687318,0,6.58967555380058,1.83831540172934,15.3926970097534,1.16089646769304,0,0.675668882899933,0,0,2.38162267109529,0,0,0,1.49091585508596,0.25326102332916,0.662045904066094,2.29469296599051,0,0,2.1349799145941,1.97334038733728,0,1.48181739276657,2.28846664358842,0,0,0.234321431833797,0.624320153660641,0,0.747243402759005,0,0.161872944368132,0,0,0.122834317311768,0,0,0.741800787835671,0,0,0,0,0,0,1.5324389789951,0.751190294532984,0.340296549480063,1.79389635688862,1.2813443329114,0,2.10063767259082,0.206105058476878,1.28820270022815,0.37223371266318,0.675105328965065,0.487185025805993,0.504867548488229,0.184099797284599,0.323292113637624,2.13005755509969,0.201504196455281,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0.38474715694639,4.42893272774789,2.80483547606892,0.8231480226628,1.47008711385542,0,0,0,0,0.122988438543114,0,0.439001141634502,0,0.201057944823262,0.0925884451585296,0,0,0,0,0.117408694235822,1.73239737313289,1.85194205030644,2.28304982681518,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.063497894292169,0,0,0,0.411309970813294,0.300343057843917,0,0,0,0,0.258543431515556,3.57656445851882,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,0,0,0.602878754119172,0,0.799783929456456,0,0,0,0,0,0,1.01346914667305,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.271265023699736,0.623912584592421,1.96271887676878,0.315404830067869,0.585707074963566,0.300946099727719,2.27407504055985,1.03473071292505,0,0,0.0868836144680828,0.195801157462741,0.343143423810856,0,0,0,0.303127571446259,0,1.20956117331872,0.744323423456331,0.920771839728375,3.08726103876381,0.128139149255701,0,1.93024705372329,2.96836132889982,0.308419387605311,0.177561725313127,0.0821271560138091,0.519254429183621,0.348631135379878,0.483437798366489,1.20303882181971,0.0920809889358963,0.114814448164607,0.364182336013434,0.262248829918848,0,0.15403067420883,0.784349769176855,0,0.105551628892876,0,2.55140557914773,1.0795795805107,20.0495428497376,0.270946437543853,0,0,0,0.223874754722178,0,0.261435451024901,0,0,0,0,0,0,0,0,3.21367859688319,0.096670718292122,0,0.921022048356777,0.137836572484531,0,1.0151168573996,0.0852266274161009,0.0890320356467374,0,0.192190067365106,0.255225424989168,0,0,0.62962469366128,0,0.308033580176089,0,0,1.11194531462352,0,0,0.316379424718726,0,0.255897791311334,0,0.318203247925937,0,0,0.274537029736055,0.117812402345686,0.202182481573316,4.75530963519025,0,0,0.731140468893853,0,0.136499911407986,0.282810863907425,1.13008116620243,0,5.97095077717098,1.31535265576129,0.578775534266688,0,0.202910376962704,0.6196469961995,0.563391205064483,0,0.196498082026242,0.35667105148125,1.06428319221179,1.47775344708365,1.31717957183961,0,0,0,0,1.08890984861323,0,0.43050537267123,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0.307160702099232,0,0,0,0,0,1.19548792950642,0,0,0.102268682502155,0,1.24415835064723,0.0898683511473268,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0.108647371922008,0.957003479195758,0.183195186803725,1.5991043280559,0,0,0,0.225595660617181,0,0,0,0,0.632994193584081,0.489698424477443,0,0,1.99052386215701,0,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.789168805698781,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0.694238953340524,0,0,0.34945333648406,0.51595809741485,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.0969890164884194,0,0.451961481561065,0,0,0,0,0.0801588202515337,1.28071796843612,0.599428828746391,0.72045208577053,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0.229160424011684,0,0.599037001496973,0.858452096273142,0,0.268733889946905,0.720599767084807,0,0,0,0.0674035438541849,0,0,0,0,0.160753148465019,0,0,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| ||
|short_description=p4@HSPG2 | |||
}} | }} |
Latest revision as of 19:28, 15 September 2015
Short description: | p4@HSPG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HSPG2_5end |
Coexpression cluster: | C547_Renal_Endothelial_Mesenchymal_Hepatic_Smooth_Fibroblast_Alveolar |
Association with transcript: | -270bp_to_S76436_5end |
EntrezGene: | HSPG2 |
HGNC: | 5273 |
UniProt: | P98160 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.09e-28 | 36 |
meso-epithelial cell | 2.21e-26 | 45 |
endothelial cell of vascular tree | 2.11e-22 | 24 |
lining cell | 4.82e-21 | 58 |
barrier cell | 4.82e-21 | 58 |
mesodermal cell | 1.34e-16 | 121 |
blood vessel endothelial cell | 1.58e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.58e-16 | 18 |
endothelial cell of artery | 2.36e-14 | 9 |
glomerular endothelial cell | 3.69e-09 | 5 |
cardiac fibroblast | 1.54e-07 | 6 |
lymphangioblast | 1.86e-07 | 6 |
endothelial cell of lymphatic vessel | 1.86e-07 | 6 |
vascular lymphangioblast | 1.86e-07 | 6 |
aortic endothelial cell | 1.99e-07 | 6 |
GAG secreting cell | 4.15e-07 | 9 |
carbohydrate secreting cell | 4.15e-07 | 9 |
endothelial cell of sinusoid | 5.48e-07 | 2 |
endothelial cell of hepatic sinusoid | 5.48e-07 | 2 |
thoracic aorta endothelial cell | 8.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous epithelium | 2.05e-18 | 25 |
splanchnic layer of lateral plate mesoderm | 8.76e-17 | 83 |
vessel | 9.39e-17 | 68 |
blood vessel endothelium | 1.58e-16 | 18 |
endothelium | 1.58e-16 | 18 |
cardiovascular system endothelium | 1.58e-16 | 18 |
simple squamous epithelium | 9.52e-16 | 22 |
endothelial tube | 2.36e-14 | 9 |
arterial system endothelium | 2.36e-14 | 9 |
endothelium of artery | 2.36e-14 | 9 |
epithelial tube | 4.60e-14 | 117 |
vasculature | 8.90e-14 | 78 |
vascular system | 8.90e-14 | 78 |
epithelial tube open at both ends | 2.25e-13 | 59 |
blood vessel | 2.25e-13 | 59 |
blood vasculature | 2.25e-13 | 59 |
vascular cord | 2.25e-13 | 59 |
cardiovascular system | 2.65e-13 | 109 |
circulatory system | 9.61e-13 | 112 |
artery | 2.70e-09 | 42 |
arterial blood vessel | 2.70e-09 | 42 |
arterial system | 2.70e-09 | 42 |
urogenital ridge | 1.50e-08 | 11 |
anatomical conduit | 5.26e-07 | 240 |
hepatic sinusoid | 5.48e-07 | 2 |
abdomen blood vessel | 5.48e-07 | 2 |
sinusoid | 5.48e-07 | 2 |
abdominal segment blood vessel | 5.48e-07 | 2 |
segment of aorta | 8.60e-07 | 2 |
thoracic aorta | 8.60e-07 | 2 |
trunk blood vessel | 9.55e-07 | 7 |