FFCP PHASE1:Hg19::chr20:34317757..34317771,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:34317757..34317771,-
|short_description=p3@RBM39
|description=CAGE_peak_3_at_RBM39_5end
|association_with_transcript=-491bp_to_ENST00000448303_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9584 | |EntrezGene=9584 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15923 | |HGNC=15923 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-491bp_to_ENST00000448303_5end | |||
|cluster_id=chr20:34317757..34317771,- | |||
|description=CAGE_peak_3_at_RBM39_5end | |||
|id=chr20:34317757..34317771,- | |||
|ontology_enrichment_celltype=CL:0000738!6.56e-24!140;CL:0000037!6.31e-22!172;CL:0000566!6.31e-22!172;CL:0002087!2.68e-21!119;CL:0002031!7.48e-21!124;CL:0000988!5.42e-20!182;CL:0002032!1.22e-19!165;CL:0000837!1.22e-19!165;CL:0000860!5.87e-19!45;CL:0002057!1.72e-17!42;CL:0000839!3.29e-15!70;CL:0000766!4.09e-15!76;CL:0002009!1.53e-14!65;CL:0000557!1.57e-14!71;CL:0002194!3.33e-14!63;CL:0000576!3.33e-14!63;CL:0000040!3.33e-14!63;CL:0000559!3.33e-14!63;CL:0000763!3.18e-13!112;CL:0000049!3.18e-13!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.31e-19;33!CL:0002057;1.31e-19;33!CL:0000576;3.67e-15;48!CL:0000473;9.24e-14;39!CL:0000234;9.24e-14;39!CL:0000766;2.30e-10;69!CL:0002087;3.74e-09;104!CL:0002393;4.76e-07;6!CL:0002397;4.76e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.48e-28,136;CL:0000860,5.48e-26,42;CL:0002057,5.48e-26,42;CL:0002087,1.38e-24,115;CL:0000037,1.90e-23,168;CL:0002031,5.15e-23,120;CL:0000473,1.75e-22,48;CL:0000234,1.75e-22,48;CL:0000988,1.92e-22,177;CL:0002032,5.72e-21,161;CL:0000837,5.72e-21,161;CL:0000766,2.41e-20,72;CL:0000839,3.16e-18,66;CL:0000557,4.76e-18,67;CL:0002009,1.25e-17,61;CL:0002194,1.94e-17,59;CL:0000576,1.94e-17,59;CL:0000040,1.94e-17,59;CL:0000559,1.94e-17,59;CL:0000763,1.23e-14,108;CL:0000049,1.23e-14,108;CL:0000134,8.73e-08,354;CL:0002320,4.06e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;2.85e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.72e-16!102;UBERON:0003061!5.72e-16!102;UBERON:0002193!6.01e-14!112;UBERON:0002371!1.58e-13!80;UBERON:0001474!5.73e-13!86;UBERON:0004765!2.75e-10!101;UBERON:0001434!2.75e-10!101;UBERON:0002405!5.76e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.08e-19,98;UBERON:0003061,4.08e-19,98;UBERON:0002371,8.03e-17,76;UBERON:0002193,1.33e-15,108;UBERON:0001474,2.72e-15,82;UBERON:0004765,1.36e-12,90;UBERON:0002405,4.74e-11,93;UBERON:0001434,1.56e-10,100 | |||
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| ||
|short_description=p3@RBM39 | |||
}} | }} |
Latest revision as of 20:59, 15 September 2015
Short description: | p3@RBM39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBM39_5end |
Coexpression cluster: | NA |
Association with transcript: | -491bp_to_ENST00000448303_5end |
EntrezGene: | RBM39 |
HGNC: | 15923 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.48e-28 | 136 |
classical monocyte | 5.48e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.48e-26 | 42 |
nongranular leukocyte | 1.38e-24 | 115 |
hematopoietic stem cell | 1.90e-23 | 168 |
hematopoietic lineage restricted progenitor cell | 5.15e-23 | 120 |
defensive cell | 1.75e-22 | 48 |
phagocyte | 1.75e-22 | 48 |
hematopoietic cell | 1.92e-22 | 177 |
hematopoietic oligopotent progenitor cell | 5.72e-21 | 161 |
hematopoietic multipotent progenitor cell | 5.72e-21 | 161 |
myeloid leukocyte | 2.41e-20 | 72 |
myeloid lineage restricted progenitor cell | 3.16e-18 | 66 |
granulocyte monocyte progenitor cell | 4.76e-18 | 67 |
macrophage dendritic cell progenitor | 1.25e-17 | 61 |
monopoietic cell | 1.94e-17 | 59 |
monocyte | 1.94e-17 | 59 |
monoblast | 1.94e-17 | 59 |
promonocyte | 1.94e-17 | 59 |
myeloid cell | 1.23e-14 | 108 |
common myeloid progenitor | 1.23e-14 | 108 |
mesenchymal cell | 8.73e-08 | 354 |
connective tissue cell | 4.06e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.08e-19 | 98 |
blood island | 4.08e-19 | 98 |
bone marrow | 8.03e-17 | 76 |
hemolymphoid system | 1.33e-15 | 108 |
bone element | 2.72e-15 | 82 |
skeletal element | 1.36e-12 | 90 |
immune system | 4.74e-11 | 93 |
skeletal system | 1.56e-10 | 100 |