FFCP PHASE1:Hg19::chr16:28996572..28996586,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:28996572..28996586,+
|short_description=p6@LAT
|description=CAGE_peak_6_at_LAT_5end
|association_with_transcript=-110bp_to_uc010vdk.1,uc010vdl.1_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27040 | |EntrezGene=27040 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18874 | |HGNC=18874 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-110bp_to_uc010vdk.1,uc010vdl.1_5end | |||
|cluster_id=chr16:28996572..28996586,+ | |||
|coexpression_cluster_id=C205 | |||
|description=CAGE_peak_6_at_LAT_5end | |||
|id=chr16:28996572..28996586,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.51e-24!25;CL:0000827!1.51e-24!25;CL:0000738!2.97e-20!140;CL:0000037!4.00e-20!172;CL:0000566!4.00e-20!172;CL:0000988!9.24e-20!182;CL:0002032!1.45e-18!165;CL:0000837!1.45e-18!165;CL:0002031!6.51e-18!124;CL:0000791!3.96e-17!18;CL:0000789!3.96e-17!18;CL:0002420!3.96e-17!18;CL:0002419!3.96e-17!18;CL:0000790!3.96e-17!18;CL:0002087!1.33e-14!119;CL:0000838!2.01e-13!52;CL:0000542!4.85e-13!53;CL:0000051!4.85e-13!53;CL:0002274!7.00e-11!5;CL:0000457!7.00e-11!5;CL:0002191!7.00e-11!5;CL:0000097!7.00e-11!5;CL:0000831!7.00e-11!5;CL:0002028!7.00e-11!5;CL:0000625!4.41e-10!11;CL:0000763!1.50e-07!112;CL:0000049!1.50e-07!112;CL:0000624!1.55e-07!6;CL:0000766!3.08e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000097;3.69e-30;5!CL:0000084;4.69e-21;25!CL:0000163;1.12e-16;9!CL:0000791;2.00e-14;18!CL:0000789;2.00e-14;18!CL:0002419;2.00e-14;18!CL:0000625;1.33e-12;11!CL:0000542;1.28e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,3.71e-30,5;CL:0002028,3.71e-30,5;CL:0000084,7.02e-21,25;CL:0000827,7.02e-21,25;CL:0000163,1.13e-16,9;CL:0000791,2.37e-14,18;CL:0000789,2.37e-14,18;CL:0002420,2.37e-14,18;CL:0002419,2.37e-14,18;CL:0000790,2.37e-14,18;CL:0000625,1.30e-12,11;CL:0000838,3.67e-11,52;CL:0000542,6.51e-11,53;CL:0000051,6.51e-11,53;CL:0002032,5.57e-10,161;CL:0000837,5.57e-10,161;CL:0000037,2.15e-09,168;CL:0002031,7.25e-09,120;CL:0000988,1.04e-08,177;CL:0000738,1.87e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;2.00e-14;18!CL:0000051;1.28e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.45e-07;1!DOID:0060061;1.45e-07;1!DOID:8691;1.45e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.46e-07,1;DOID:0060061,1.46e-07,1;DOID:8691,1.46e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.24e-12!102;UBERON:0003061!1.24e-12!102;UBERON:0002193!1.85e-11!112;UBERON:0000178!2.95e-08!15;UBERON:0000179!2.95e-08!15;UBERON:0000463!2.95e-08!15;UBERON:0002370!2.70e-07!4;UBERON:0005058!2.70e-07!4;UBERON:0009113!2.70e-07!4;UBERON:0003295!2.70e-07!4;UBERON:0005562!2.70e-07!4 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p6@LAT | |||
}} | }} |
Latest revision as of 02:01, 16 September 2015
Short description: | p6@LAT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LAT_5end |
Coexpression cluster: | C205_mycosis_cord_hairy_xeroderma_CD4_B_b |
Association with transcript: | -110bp_to_uc010vdk.1, uc010vdl.1_5end |
EntrezGene: | LAT |
HGNC: | 18874 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 3.71e-30 | 5 |
basophil mast progenitor cell | 3.71e-30 | 5 |
T cell | 7.02e-21 | 25 |
pro-T cell | 7.02e-21 | 25 |
endocrine cell | 1.13e-16 | 9 |
mature alpha-beta T cell | 2.37e-14 | 18 |
alpha-beta T cell | 2.37e-14 | 18 |
immature T cell | 2.37e-14 | 18 |
mature T cell | 2.37e-14 | 18 |
immature alpha-beta T cell | 2.37e-14 | 18 |
CD8-positive, alpha-beta T cell | 1.30e-12 | 11 |
lymphoid lineage restricted progenitor cell | 3.67e-11 | 52 |
lymphocyte | 6.51e-11 | 53 |
common lymphoid progenitor | 6.51e-11 | 53 |
hematopoietic oligopotent progenitor cell | 5.57e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.57e-10 | 161 |
hematopoietic stem cell | 2.15e-09 | 168 |
hematopoietic lineage restricted progenitor cell | 7.25e-09 | 120 |
hematopoietic cell | 1.04e-08 | 177 |
leukocyte | 1.87e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.46e-07 | 1 |
cutaneous T cell lymphoma | 1.46e-07 | 1 |
mycosis fungoides | 1.46e-07 | 1 |