FFCP PHASE1:Hg19::chr5:149324367..149324384,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5145 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8785 | |||
|TSSclassifier=strong | |||
|UniProt=P16499 | |||
|association_with_transcript=-11bp_to_ENST00000255266,ENST00000508173,NM_000440,uc003lrg.3_5end | |||
|cluster_id=chr5:149324367..149324384,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_2_at_PDE6A_5end | |||
|id=chr5:149324367..149324384,- | |||
|ontology_enrichment_celltype=CL:0002623!4.12e-23!3;CL:0002336!1.44e-17!1;CL:0002261!1.44e-17!1;CL:0002170!1.44e-17!1;CL:0000622!2.76e-14!5;CL:0000154!4.55e-12!6;CL:0002588!1.71e-09!2;CL:0000150!2.37e-08!9;CL:0002251!1.09e-07!21 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.35e-66;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;1.13e-13;4!DOID:1325;2.18e-08;7!DOID:3904;2.18e-08;7!DOID:3905;8.37e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.13e-13,4;DOID:1325,2.18e-08,7;DOID:3904,2.18e-08,7;DOID:3905,8.37e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.84e-14!5;UBERON:0005388!1.84e-14!5;UBERON:0001802!1.84e-14!5;UBERON:0001044!4.55e-12!6;UBERON:0003293!4.55e-12!6;UBERON:0003294!4.55e-12!6;UBERON:0010047!4.55e-12!6;UBERON:0000167!4.55e-12!6;UBERON:0003127!2.02e-09!2;UBERON:0001444!1.02e-08!48;UBERON:0000970!3.33e-08!20;UBERON:0002104!7.71e-08!21;UBERON:0003408!1.33e-07!10;UBERON:0000020!3.34e-07!23;UBERON:0001032!6.35e-07!24;UBERON:0004456!6.35e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.71e-40;5!UBERON:0005388;2.71e-40;5!UBERON:0001802;2.71e-40;5!UBERON:0000970;4.26e-23;20!UBERON:0002104;4.76e-22;21!UBERON:0000020;3.18e-20;23!UBERON:0001032;2.00e-19;24!UBERON:0004456;2.00e-19;24!UBERON:0000019;1.72e-11;19!UBERON:0000047;1.72e-11;19!UBERON:0004088;1.72e-11;19!UBERON:0010230;1.72e-11;19!UBERON:0001456;1.69e-10;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,8.35e-34,6;UBERON:0005388,8.35e-34,6;UBERON:0001802,8.35e-34,6;UBERON:0000970,4.76e-22,21;UBERON:0002104,4.76e-22,21;UBERON:0000020,2.00e-19,24;UBERON:0001032,2.00e-19,24;UBERON:0004456,2.00e-19,24;UBERON:0000019,5.70e-11,20;UBERON:0000047,5.70e-11,20;UBERON:0010312,5.70e-11,20;UBERON:0004088,5.70e-11,20;UBERON:0010230,5.70e-11,20;UBERON:0003072,5.70e-11,20;UBERON:0004128,5.70e-11,20;UBERON:0003071,5.70e-11,20;UBERON:0001456,4.53e-10,22;UBERON:0005085,1.92e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.24218963337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,63.6141243172241,1.42212250559454,0,0,0,0,0.85359238546975,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29821550236287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@PDE6A | |||
}} |
Latest revision as of 02:28, 16 September 2015
Short description: | p2@PDE6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PDE6A_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -11bp_to_ENST00000255266, ENST00000508173, NM_000440, uc003lrg.3_5end |
EntrezGene: | PDE6A |
HGNC: | 8785 |
UniProt: | P16499 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 8.35e-34 | 6 |
photoreceptor array | 8.35e-34 | 6 |
posterior segment of eyeball | 8.35e-34 | 6 |
eye | 4.76e-22 | 21 |
visual system | 4.76e-22 | 21 |
sense organ | 2.00e-19 | 24 |
sensory system | 2.00e-19 | 24 |
entire sense organ system | 2.00e-19 | 24 |
camera-type eye | 5.70e-11 | 20 |
simple eye | 5.70e-11 | 20 |
immature eye | 5.70e-11 | 20 |
ocular region | 5.70e-11 | 20 |
eyeball of camera-type eye | 5.70e-11 | 20 |
optic cup | 5.70e-11 | 20 |
optic vesicle | 5.70e-11 | 20 |
eye primordium | 5.70e-11 | 20 |
face | 4.53e-10 | 22 |
ectodermal placode | 1.92e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.13e-13 | 4 |
bronchus cancer | 2.18e-08 | 7 |
bronchogenic carcinoma | 2.18e-08 | 7 |
lung carcinoma | 8.37e-07 | 9 |