FFCP PHASE1:Hg19::chr7:127544658..127544672,+: Difference between revisions
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|id=chr7:127544658..127544672,+
|short_description=p7@SND1
|description=CAGE_peak_7_at_SND1_5end
|association_with_transcript=-6bp_to_ENST00000492840_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27044 | |EntrezGene=27044 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30646 | |HGNC=30646 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-6bp_to_ENST00000492840_5end | |||
|cluster_id=chr7:127544658..127544672,+ | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_7_at_SND1_5end | |||
|id=chr7:127544658..127544672,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001896,9.46e-18,3;UBERON:0005290,9.46e-18,3;UBERON:0010096,9.46e-18,3;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0002298,1.44e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24 | |||
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|short_description=p7@SND1 | |||
}} | }} |
Latest revision as of 02:46, 16 September 2015
Short description: | p7@SND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SND1_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -6bp_to_ENST00000492840_5end |
EntrezGene: | SND1 |
HGNC: | 30646 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 9.46e-18 | 3 |
myelencephalon | 9.46e-18 | 3 |
future myelencephalon | 9.46e-18 | 3 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
brainstem | 1.44e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |