FFCP PHASE2:Hg19::chr12:108154762..108154776,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:11108 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9348 |TSSclas...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=11108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9348 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 03:52, 16 September 2015
| Short description: | p4@PRDM4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_PRDM4_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 24bp_to_ENST00000547268_5end |
| EntrezGene: | PRDM4 |
| HGNC: | 9348 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@PRDM4 |
|---|
0
2
4
6
8
10
12
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intermediate monocyte | 7.00e-26 | 9 |
| CD14-positive, CD16-positive monocyte | 7.00e-26 | 9 |
| hematopoietic cell | 1.09e-22 | 177 |
| hematopoietic stem cell | 1.43e-22 | 168 |
| hematopoietic oligopotent progenitor cell | 3.99e-22 | 161 |
| hematopoietic multipotent progenitor cell | 3.99e-22 | 161 |
| myeloid cell | 4.65e-20 | 108 |
| common myeloid progenitor | 4.65e-20 | 108 |
| leukocyte | 5.94e-18 | 136 |
| myeloid leukocyte | 3.28e-17 | 72 |
Showing 1 to 10 of 32 entries
| Ontology term | p-value | n |
|---|---|---|
| bone marrow | 2.04e-12 | 76 |
| hematopoietic system | 1.38e-11 | 98 |
| blood island | 1.38e-11 | 98 |
| bone element | 2.88e-11 | 82 |
| hemolymphoid system | 3.66e-10 | 108 |
| skeletal element | 5.65e-10 | 90 |
| immune system | 1.51e-09 | 93 |
| skeletal system | 1.19e-08 | 100 |
Showing 1 to 8 of 8 entries
