FFCP PHASE1:Hg19::chr17:48844868..48844891,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=26080 | |HGNC=26080 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000300458,ENST00000419688,ENST00000450727_5end | |association_with_transcript=0bp_to_ENST00000300458,ENST00000419688,ENST00000450727_5end | ||
|cluster_id=chr17:48844868..48844891,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_1_at_LINC00483_5end | |description=CAGE_peak_1_at_LINC00483_5end | ||
|id=chr17:48844868..48844891,- | |id=chr17:48844868..48844891,- | ||
|ontology_enrichment_celltype=CL:0002563!6.48e-09!4 | |ontology_enrichment_celltype=CL:0002563!6.48e-09!4 | ||
|ontology_enrichment_celltype_v019=CL:0002563;3.36e-12;4!CL:0002253;5.90e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.27e-12,4;CL:0002253,5.73e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.46e-12;1!UBERON:0006242;3.85e-12;1 | |||
|ontology_enrichment_disease=DOID:299!1.40e-07!25 | |ontology_enrichment_disease=DOID:299!1.40e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:3493;5.90e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,6.07e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!5.27e-40!35;UBERON:0000160!2.36e-38!27;UBERON:0000059!1.75e-34!11;UBERON:0004907!2.40e-25!5;UBERON:0001155!4.77e-22!9;UBERON:0001052!2.46e-18!4;UBERON:0001007!3.98e-18!155;UBERON:0001555!3.98e-18!155;UBERON:0007026!3.98e-18!155;UBERON:0004921!4.76e-18!129;UBERON:0004185!4.76e-18!129;UBERON:0004119!2.50e-16!169;UBERON:0000925!2.50e-16!169;UBERON:0006595!2.50e-16!169;UBERON:0001046!3.81e-10!19;UBERON:0001154!3.88e-09!1;UBERON:0001153!3.88e-09!1;UBERON:0001242!6.48e-09!4;UBERON:0001262!6.48e-09!4;UBERON:0004786!6.48e-09!4;UBERON:0004808!6.48e-09!4;UBERON:0001277!6.48e-09!4;UBERON:0002146!7.27e-09!1;UBERON:0005623!7.27e-09!1;UBERON:0002108!1.43e-08!14;UBERON:0000481!9.35e-08!347;UBERON:0000077!1.49e-07!130;UBERON:0003350!2.70e-07!5 | |ontology_enrichment_uberon=UBERON:0005409!5.27e-40!35;UBERON:0000160!2.36e-38!27;UBERON:0000059!1.75e-34!11;UBERON:0004907!2.40e-25!5;UBERON:0001155!4.77e-22!9;UBERON:0001052!2.46e-18!4;UBERON:0001007!3.98e-18!155;UBERON:0001555!3.98e-18!155;UBERON:0007026!3.98e-18!155;UBERON:0004921!4.76e-18!129;UBERON:0004185!4.76e-18!129;UBERON:0004119!2.50e-16!169;UBERON:0000925!2.50e-16!169;UBERON:0006595!2.50e-16!169;UBERON:0001046!3.81e-10!19;UBERON:0001154!3.88e-09!1;UBERON:0001153!3.88e-09!1;UBERON:0001242!6.48e-09!4;UBERON:0001262!6.48e-09!4;UBERON:0004786!6.48e-09!4;UBERON:0004808!6.48e-09!4;UBERON:0001277!6.48e-09!4;UBERON:0002146!7.27e-09!1;UBERON:0005623!7.27e-09!1;UBERON:0002108!1.43e-08!14;UBERON:0000481!9.35e-08!347;UBERON:0000077!1.49e-07!130;UBERON:0003350!2.70e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.44e-73;17!UBERON:0005409;8.88e-68;22!UBERON:0000059;6.04e-49;11!UBERON:0004921;2.31e-41;33!UBERON:0004907;1.51e-35;5!UBERON:0001155;3.84e-31;9!UBERON:0001052;1.54e-25;4!UBERON:0002108;6.38e-21;4!UBERON:0001555;1.33e-15;54!UBERON:0001007;1.36e-12;81!UBERON:0001154;2.46e-12;1!UBERON:0001153;2.46e-12;1!UBERON:0009854;2.46e-12;1!UBERON:0001242;3.36e-12;4!UBERON:0001262;3.36e-12;4!UBERON:0004786;3.36e-12;4!UBERON:0004808;3.36e-12;4!UBERON:0001277;3.36e-12;4!UBERON:0000485;2.41e-07;7!UBERON:0003929;2.41e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.28e-73,17;UBERON:0005409,8.09e-60,25;UBERON:0000059,5.62e-49,11;UBERON:0004907,1.38e-35,5;UBERON:0001155,3.73e-31,9;UBERON:0001052,1.42e-25,4;UBERON:0002108,6.38e-21,4;UBERON:0004921,2.48e-16,118;UBERON:0001007,5.06e-15,145;UBERON:0001555,5.06e-15,145;UBERON:0007026,5.06e-15,145;UBERON:0001046,1.89e-14,19;UBERON:0004119,1.99e-13,160;UBERON:0000925,1.99e-13,160;UBERON:0006595,1.99e-13,160;UBERON:0001154,2.46e-12,1;UBERON:0001153,2.46e-12,1;UBERON:0001045,2.46e-12,1;UBERON:0001242,3.27e-12,4;UBERON:0001262,3.27e-12,4;UBERON:0004786,3.27e-12,4;UBERON:0004808,3.27e-12,4;UBERON:0001277,3.27e-12,4;UBERON:0011216,6.49e-09,223 | |||
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|short_description=p1@LINC00483 | |short_description=p1@LINC00483 | ||
}} | }} |
Latest revision as of 04:11, 16 September 2015
Short description: | p1@LINC00483 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00483_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000300458, ENST00000419688, ENST00000450727_5end |
EntrezGene: | NA |
HGNC: | 26080 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.27e-12 | 4 |
epithelial cell of large intestine | 5.73e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.28e-73 | 17 |
gastrointestinal system | 8.09e-60 | 25 |
large intestine | 5.62e-49 | 11 |
lower digestive tract | 1.38e-35 | 5 |
colon | 3.73e-31 | 9 |
rectum | 1.42e-25 | 4 |
small intestine | 6.38e-21 | 4 |
subdivision of digestive tract | 2.48e-16 | 118 |
digestive system | 5.06e-15 | 145 |
digestive tract | 5.06e-15 | 145 |
primitive gut | 5.06e-15 | 145 |
hindgut | 1.89e-14 | 19 |
endoderm-derived structure | 1.99e-13 | 160 |
endoderm | 1.99e-13 | 160 |
presumptive endoderm | 1.99e-13 | 160 |
vermiform appendix | 2.46e-12 | 1 |
caecum | 2.46e-12 | 1 |
midgut | 2.46e-12 | 1 |
intestinal mucosa | 3.27e-12 | 4 |
wall of intestine | 3.27e-12 | 4 |
gastrointestinal system mucosa | 3.27e-12 | 4 |
gastrointestinal system epithelium | 3.27e-12 | 4 |
intestinal epithelium | 3.27e-12 | 4 |
organ system subdivision | 6.49e-09 | 223 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 6.07e-07 | 2 |