FFCP PHASE1:Hg19::chr17:48844903..48844922,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55018 | |EntrezGene=55018 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=26080 | |HGNC=26080 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000502517,NR_024626,uc010wmx.1_5end | |association_with_transcript=0bp_to_ENST00000502517,NR_024626,uc010wmx.1_5end | ||
|cluster_id=chr17:48844903..48844922,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_2_at_LINC00483_5end | |description=CAGE_peak_2_at_LINC00483_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002563!9.74e-08!4 | |ontology_enrichment_celltype=CL:0002563!9.74e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0002563;1.10e-11;4 | |ontology_enrichment_celltype_v019=CL:0002563;1.10e-11;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.07e-11,4 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.25e-11;1!UBERON:0006242;1.25e-11;1 | |ontology_enrichment_development_v019=UBERON:0001045;1.25e-11;1!UBERON:0006242;1.25e-11;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3493;9.69e-07;2 | |ontology_enrichment_disease_v019=DOID:3493;9.69e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,9.44e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.02e-33!35;UBERON:0000160!3.94e-32!27;UBERON:0000059!3.84e-29!11;UBERON:0004907!1.34e-21!5;UBERON:0001155!1.10e-18!9;UBERON:0004921!5.50e-18!129;UBERON:0004185!5.50e-18!129;UBERON:0001007!6.10e-16!155;UBERON:0001555!6.10e-16!155;UBERON:0007026!6.10e-16!155;UBERON:0001052!1.12e-15!4;UBERON:0004119!2.88e-14!169;UBERON:0000925!2.88e-14!169;UBERON:0006595!2.88e-14!169;UBERON:0001046!1.49e-08!19;UBERON:0000077!3.71e-08!130;UBERON:0001154!5.70e-08!1;UBERON:0001153!5.70e-08!1;UBERON:0001242!9.74e-08!4;UBERON:0001262!9.74e-08!4;UBERON:0004786!9.74e-08!4;UBERON:0004808!9.74e-08!4;UBERON:0001277!9.74e-08!4;UBERON:0002108!2.82e-07!14;UBERON:0002370!4.42e-07!4;UBERON:0005058!4.42e-07!4;UBERON:0009113!4.42e-07!4;UBERON:0003295!4.42e-07!4;UBERON:0005562!4.42e-07!4 | |ontology_enrichment_uberon=UBERON:0005409!2.02e-33!35;UBERON:0000160!3.94e-32!27;UBERON:0000059!3.84e-29!11;UBERON:0004907!1.34e-21!5;UBERON:0001155!1.10e-18!9;UBERON:0004921!5.50e-18!129;UBERON:0004185!5.50e-18!129;UBERON:0001007!6.10e-16!155;UBERON:0001555!6.10e-16!155;UBERON:0007026!6.10e-16!155;UBERON:0001052!1.12e-15!4;UBERON:0004119!2.88e-14!169;UBERON:0000925!2.88e-14!169;UBERON:0006595!2.88e-14!169;UBERON:0001046!1.49e-08!19;UBERON:0000077!3.71e-08!130;UBERON:0001154!5.70e-08!1;UBERON:0001153!5.70e-08!1;UBERON:0001242!9.74e-08!4;UBERON:0001262!9.74e-08!4;UBERON:0004786!9.74e-08!4;UBERON:0004808!9.74e-08!4;UBERON:0001277!9.74e-08!4;UBERON:0002108!2.82e-07!14;UBERON:0002370!4.42e-07!4;UBERON:0005058!4.42e-07!4;UBERON:0009113!4.42e-07!4;UBERON:0003295!4.42e-07!4;UBERON:0005562!4.42e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.42e-69;17!UBERON:0005409;3.96e-64;22!UBERON:0000059;2.99e-46;11!UBERON:0004921;4.30e-39;33!UBERON:0004907;1.29e-33;5!UBERON:0001155;1.91e-29;9!UBERON:0001052;2.98e-24;4!UBERON:0002108;7.40e-20;4!UBERON:0001555;9.51e-15;54!UBERON:0001007;6.48e-12;81!UBERON:0001242;1.10e-11;4!UBERON:0001262;1.10e-11;4!UBERON:0004786;1.10e-11;4!UBERON:0004808;1.10e-11;4!UBERON:0001277;1.10e-11;4!UBERON:0001154;1.25e-11;1!UBERON:0001153;1.25e-11;1!UBERON:0009854;1.25e-11;1!UBERON:0000485;4.81e-07;7!UBERON:0003929;4.81e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0000160;2.42e-69;17!UBERON:0005409;3.96e-64;22!UBERON:0000059;2.99e-46;11!UBERON:0004921;4.30e-39;33!UBERON:0004907;1.29e-33;5!UBERON:0001155;1.91e-29;9!UBERON:0001052;2.98e-24;4!UBERON:0002108;7.40e-20;4!UBERON:0001555;9.51e-15;54!UBERON:0001007;6.48e-12;81!UBERON:0001242;1.10e-11;4!UBERON:0001262;1.10e-11;4!UBERON:0004786;1.10e-11;4!UBERON:0004808;1.10e-11;4!UBERON:0001277;1.10e-11;4!UBERON:0001154;1.25e-11;1!UBERON:0001153;1.25e-11;1!UBERON:0009854;1.25e-11;1!UBERON:0000485;4.81e-07;7!UBERON:0003929;4.81e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.87e-69,17;UBERON:0005409,1.25e-56,25;UBERON:0000059,2.21e-46,11;UBERON:0004907,8.43e-34,5;UBERON:0001155,1.60e-29,9;UBERON:0001052,2.64e-24,4;UBERON:0002108,7.89e-20,4;UBERON:0004921,2.58e-15,118;UBERON:0001007,4.65e-14,145;UBERON:0001555,4.65e-14,145;UBERON:0007026,4.65e-14,145;UBERON:0001046,1.11e-13,19;UBERON:0004119,1.53e-12,160;UBERON:0000925,1.53e-12,160;UBERON:0006595,1.53e-12,160;UBERON:0001154,8.64e-12,1;UBERON:0001153,8.64e-12,1;UBERON:0001045,8.64e-12,1;UBERON:0001242,1.07e-11,4;UBERON:0001262,1.07e-11,4;UBERON:0004786,1.07e-11,4;UBERON:0004808,1.07e-11,4;UBERON:0001277,1.07e-11,4;UBERON:0011216,1.56e-09,223 | |||
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|short_description=p2@LINC00483 | |short_description=p2@LINC00483 | ||
}} | }} |
Latest revision as of 04:11, 16 September 2015
Short description: | p2@LINC00483 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LINC00483_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000502517, NR_024626, uc010wmx.1_5end |
EntrezGene: | LINC00483 |
HGNC: | 26080 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.07e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.87e-69 | 17 |
gastrointestinal system | 1.25e-56 | 25 |
large intestine | 2.21e-46 | 11 |
lower digestive tract | 8.43e-34 | 5 |
colon | 1.60e-29 | 9 |
rectum | 2.64e-24 | 4 |
small intestine | 7.89e-20 | 4 |
subdivision of digestive tract | 2.58e-15 | 118 |
digestive system | 4.65e-14 | 145 |
digestive tract | 4.65e-14 | 145 |
primitive gut | 4.65e-14 | 145 |
hindgut | 1.11e-13 | 19 |
endoderm-derived structure | 1.53e-12 | 160 |
endoderm | 1.53e-12 | 160 |
presumptive endoderm | 1.53e-12 | 160 |
vermiform appendix | 8.64e-12 | 1 |
caecum | 8.64e-12 | 1 |
midgut | 8.64e-12 | 1 |
intestinal mucosa | 1.07e-11 | 4 |
wall of intestine | 1.07e-11 | 4 |
gastrointestinal system mucosa | 1.07e-11 | 4 |
gastrointestinal system epithelium | 1.07e-11 | 4 |
intestinal epithelium | 1.07e-11 | 4 |
organ system subdivision | 1.56e-09 | 223 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 9.44e-07 | 2 |