FFCP PHASE1:Hg19::chr6:151042333..151042356,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57480 | |EntrezGene=57480 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20884 | |HGNC=20884 | ||
|TSSclassifier=strong | |||
|UniProt=Q9ULL1 | |UniProt=Q9ULL1 | ||
|association_with_transcript=109bp_to_ENST00000358517_5end | |association_with_transcript=109bp_to_ENST00000358517_5end | ||
|cluster_id=chr6:151042333..151042356,+ | |||
|coexpression_cluster_id=C1711 | |||
|description=CAGE_peak_9_at_PLEKHG1_5end | |description=CAGE_peak_9_at_PLEKHG1_5end | ||
|id=chr6:151042333..151042356,+ | |id=chr6:151042333..151042356,+ | ||
|ontology_enrichment_celltype=CL:0000128!5.41e-10!7;CL:0000126!5.41e-10!7;CL:0000127!5.41e-10!7;CL:0002453!5.41e-10!7;CL:0002605!1.14e-09!3;CL:0000064!2.04e-09!3;CL:0005012!2.04e-09!3;CL:0000067!2.04e-09!3;CL:0002304!2.04e-09!3;CL:0000047!8.86e-09!8;CL:0002319!1.90e-08!25 | |ontology_enrichment_celltype=CL:0000128!5.41e-10!7;CL:0000126!5.41e-10!7;CL:0000127!5.41e-10!7;CL:0002453!5.41e-10!7;CL:0002605!1.14e-09!3;CL:0000064!2.04e-09!3;CL:0005012!2.04e-09!3;CL:0000067!2.04e-09!3;CL:0002304!2.04e-09!3;CL:0000047!8.86e-09!8;CL:0002319!1.90e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0002605;3.86e-41;3!CL:0000064;8.55e-40;3!CL:0000067;8.55e-40;3!CL:0005012;8.55e-40;3!CL:0002304;8.55e-40;3!CL:0000128;3.72e-31;7!CL:0000126;3.72e-31;7!CL:0000127;3.72e-31;7!CL:0000047;9.96e-28;2!CL:0002319;9.22e-24;25!CL:0000243;4.92e-13;15!CL:0000125;4.92e-13;15!CL:0000095;1.09e-11;17!CL:0000075;4.41e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,4.42e-41,3;CL:0000064,7.48e-40,3;CL:0000067,7.48e-40,3;CL:0005012,7.48e-40,3;CL:0002304,7.48e-40,3;CL:0000128,3.87e-31,7;CL:0000126,3.87e-31,7;CL:0000127,3.87e-31,7;CL:0002453,3.87e-31,7;CL:0002319,8.91e-24,25;CL:0000133,1.03e-20,59;CL:0000221,6.88e-17,72;CL:0000047,1.48e-15,8;CL:0000243,5.00e-13,15;CL:0000125,5.00e-13,15;CL:0000030,5.00e-13,15;CL:0000339,5.00e-13,15;CL:0000095,1.10e-11,17;CL:0000123,1.10e-11,17;CL:0000075,4.32e-08,27 | |||
|ontology_enrichment_development_v019=CL:0000133;5.47e-14;59!CL:0000339;4.92e-13;15!CL:0000221;1.12e-09;72 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.61e-14;1!DOID:4549;1.61e-14;1!DOID:5861;1.61e-14;1!DOID:6496;1.61e-14;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.61e-14,1;DOID:4549,1.61e-14,1;DOID:5861,1.61e-14,1;DOID:6496,1.61e-14,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.61e-41!82;UBERON:0005743!1.91e-40!86;UBERON:0001049!2.64e-36!57;UBERON:0005068!2.64e-36!57;UBERON:0006241!2.64e-36!57;UBERON:0007135!2.64e-36!57;UBERON:0000073!1.34e-35!94;UBERON:0001016!1.34e-35!94;UBERON:0003075!2.12e-34!86;UBERON:0007284!2.12e-34!86;UBERON:0002780!4.46e-34!41;UBERON:0001890!4.46e-34!41;UBERON:0006240!4.46e-34!41;UBERON:0003056!8.97e-34!61;UBERON:0003080!4.13e-33!42;UBERON:0001893!1.28e-32!34;UBERON:0002346!2.09e-32!90;UBERON:0002616!2.37e-32!59;UBERON:0002791!1.16e-30!33;UBERON:0000955!4.40e-30!69;UBERON:0006238!4.40e-30!69;UBERON:0002020!1.07e-29!34;UBERON:0003528!1.07e-29!34;UBERON:0001869!6.65e-29!32;UBERON:0000033!8.69e-25!123;UBERON:0000153!1.33e-24!129;UBERON:0007811!1.33e-24!129;UBERON:0004121!5.00e-22!169;UBERON:0000924!3.07e-21!173;UBERON:0006601!3.07e-21!173;UBERON:0000956!1.52e-18!25;UBERON:0000203!1.52e-18!25;UBERON:0007023!3.46e-18!115;UBERON:0001950!2.73e-14!20;UBERON:0002308!2.85e-13!9;UBERON:0000125!2.85e-13!9;UBERON:0002420!5.99e-13!9;UBERON:0007245!5.99e-13!9;UBERON:0010009!5.99e-13!9;UBERON:0010011!5.99e-13!9;UBERON:0000454!5.99e-13!9;UBERON:0002619!8.28e-13!22;UBERON:0009663!8.84e-13!7;UBERON:0000369!1.02e-10!4;UBERON:0002435!1.02e-10!4;UBERON:0000204!1.02e-10!4;UBERON:0010082!1.02e-10!4;UBERON:0000200!5.61e-10!6;UBERON:0001778!2.04e-09!3;UBERON:0001775!2.04e-09!3;UBERON:0005383!1.09e-08!3;UBERON:0005382!1.09e-08!3;UBERON:0000025!4.33e-08!194;UBERON:0000475!6.30e-08!365;UBERON:0002771!9.27e-08!3;UBERON:0000064!1.41e-07!219;UBERON:0001871!2.77e-07!7;UBERON:0000488!3.95e-07!4;UBERON:0000477!4.66e-07!286 | |ontology_enrichment_uberon=UBERON:0001017!8.61e-41!82;UBERON:0005743!1.91e-40!86;UBERON:0001049!2.64e-36!57;UBERON:0005068!2.64e-36!57;UBERON:0006241!2.64e-36!57;UBERON:0007135!2.64e-36!57;UBERON:0000073!1.34e-35!94;UBERON:0001016!1.34e-35!94;UBERON:0003075!2.12e-34!86;UBERON:0007284!2.12e-34!86;UBERON:0002780!4.46e-34!41;UBERON:0001890!4.46e-34!41;UBERON:0006240!4.46e-34!41;UBERON:0003056!8.97e-34!61;UBERON:0003080!4.13e-33!42;UBERON:0001893!1.28e-32!34;UBERON:0002346!2.09e-32!90;UBERON:0002616!2.37e-32!59;UBERON:0002791!1.16e-30!33;UBERON:0000955!4.40e-30!69;UBERON:0006238!4.40e-30!69;UBERON:0002020!1.07e-29!34;UBERON:0003528!1.07e-29!34;UBERON:0001869!6.65e-29!32;UBERON:0000033!8.69e-25!123;UBERON:0000153!1.33e-24!129;UBERON:0007811!1.33e-24!129;UBERON:0004121!5.00e-22!169;UBERON:0000924!3.07e-21!173;UBERON:0006601!3.07e-21!173;UBERON:0000956!1.52e-18!25;UBERON:0000203!1.52e-18!25;UBERON:0007023!3.46e-18!115;UBERON:0001950!2.73e-14!20;UBERON:0002308!2.85e-13!9;UBERON:0000125!2.85e-13!9;UBERON:0002420!5.99e-13!9;UBERON:0007245!5.99e-13!9;UBERON:0010009!5.99e-13!9;UBERON:0010011!5.99e-13!9;UBERON:0000454!5.99e-13!9;UBERON:0002619!8.28e-13!22;UBERON:0009663!8.84e-13!7;UBERON:0000369!1.02e-10!4;UBERON:0002435!1.02e-10!4;UBERON:0000204!1.02e-10!4;UBERON:0010082!1.02e-10!4;UBERON:0000200!5.61e-10!6;UBERON:0001778!2.04e-09!3;UBERON:0001775!2.04e-09!3;UBERON:0005383!1.09e-08!3;UBERON:0005382!1.09e-08!3;UBERON:0000025!4.33e-08!194;UBERON:0000475!6.30e-08!365;UBERON:0002771!9.27e-08!3;UBERON:0000064!1.41e-07!219;UBERON:0001871!2.77e-07!7;UBERON:0000488!3.95e-07!4;UBERON:0000477!4.66e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;8.55e-40;3!UBERON:0001775;8.55e-40;3!UBERON:0000488;4.73e-30;4!UBERON:0002203;2.77e-20;6!UBERON:0001768;2.77e-20;6!UBERON:0002200;2.77e-20;6!UBERON:0007625;1.94e-19;11!UBERON:0001801;2.39e-15;14!UBERON:0000019;2.19e-11;19!UBERON:0000047;2.19e-11;19!UBERON:0004088;2.19e-11;19!UBERON:0010230;2.19e-11;19!UBERON:0006876;2.34e-11;11!UBERON:0000970;7.88e-11;20!UBERON:0002104;2.51e-10;21!UBERON:0001456;2.51e-10;21!UBERON:0000020;1.89e-09;23!UBERON:0001032;4.58e-09;24!UBERON:0004456;4.58e-09;24!UBERON:0010371;5.14e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,7.48e-40,3;UBERON:0001775,7.48e-40,3;UBERON:0000488,4.28e-30,4;UBERON:0002203,2.59e-20,6;UBERON:0001768,2.59e-20,6;UBERON:0002200,2.59e-20,6;UBERON:0007625,1.85e-19,11;UBERON:0001801,2.31e-15,14;UBERON:0006876,2.26e-11,11;UBERON:0000019,7.67e-11,20;UBERON:0000047,7.67e-11,20;UBERON:0010312,7.67e-11,20;UBERON:0004088,7.67e-11,20;UBERON:0010230,7.67e-11,20;UBERON:0003072,7.67e-11,20;UBERON:0004128,7.67e-11,20;UBERON:0003071,7.67e-11,20;UBERON:0000970,2.45e-10,21;UBERON:0002104,2.45e-10,21;UBERON:0003056,5.29e-10,61;UBERON:0001456,7.05e-10,22;UBERON:0000020,4.48e-09,24;UBERON:0001032,4.48e-09,24;UBERON:0004456,4.48e-09,24;UBERON:0004121,5.59e-08,171;UBERON:0000924,5.59e-08,171;UBERON:0006601,5.59e-08,171;UBERON:0001017,2.28e-07,81;UBERON:0003075,2.53e-07,82;UBERON:0007284,2.53e-07,82;UBERON:0005085,4.52e-07,31;UBERON:0002346,5.87e-07,86 | |||
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| ||
|short_description=p9@PLEKHG1 | |short_description=p9@PLEKHG1 | ||
}} | }} |
Latest revision as of 04:12, 16 September 2015
Short description: | p9@PLEKHG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PLEKHG1_5end |
Coexpression cluster: | C1711_astrocytoma_Astrocyte_Neural_Wilms_acute_Ciliary_Lens |
Association with transcript: | 109bp_to_ENST00000358517_5end |
EntrezGene: | PLEKHG1 |
HGNC: | 20884 |
UniProt: | Q9ULL1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 4.42e-41 | 3 |
ciliated cell | 7.48e-40 | 3 |
ciliated epithelial cell | 7.48e-40 | 3 |
multi-ciliated epithelial cell | 7.48e-40 | 3 |
non-pigmented ciliary epithelial cell | 7.48e-40 | 3 |
oligodendrocyte | 3.87e-31 | 7 |
macroglial cell | 3.87e-31 | 7 |
astrocyte | 3.87e-31 | 7 |
oligodendrocyte precursor cell | 3.87e-31 | 7 |
neural cell | 8.91e-24 | 25 |
neurectodermal cell | 1.03e-20 | 59 |
ectodermal cell | 6.88e-17 | 72 |
neuronal stem cell | 1.48e-15 | 8 |
glial cell (sensu Vertebrata) | 5.00e-13 | 15 |
glial cell | 5.00e-13 | 15 |
glioblast | 5.00e-13 | 15 |
glioblast (sensu Vertebrata) | 5.00e-13 | 15 |
neuron associated cell | 1.10e-11 | 17 |
neuron associated cell (sensu Vertebrata) | 1.10e-11 | 17 |
columnar/cuboidal epithelial cell | 4.32e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 7.48e-40 | 3 |
ciliary body | 7.48e-40 | 3 |
atypical epithelium | 4.28e-30 | 4 |
vasculature of eye | 2.59e-20 | 6 |
uvea | 2.59e-20 | 6 |
vasculature of head | 2.59e-20 | 6 |
pigment epithelium of eye | 1.85e-19 | 11 |
anterior segment of eyeball | 2.31e-15 | 14 |
vasculature of organ | 2.26e-11 | 11 |
camera-type eye | 7.67e-11 | 20 |
simple eye | 7.67e-11 | 20 |
immature eye | 7.67e-11 | 20 |
ocular region | 7.67e-11 | 20 |
eyeball of camera-type eye | 7.67e-11 | 20 |
optic cup | 7.67e-11 | 20 |
optic vesicle | 7.67e-11 | 20 |
eye primordium | 7.67e-11 | 20 |
eye | 2.45e-10 | 21 |
visual system | 2.45e-10 | 21 |
pre-chordal neural plate | 5.29e-10 | 61 |
face | 7.05e-10 | 22 |
sense organ | 4.48e-09 | 24 |
sensory system | 4.48e-09 | 24 |
entire sense organ system | 4.48e-09 | 24 |
ectoderm-derived structure | 5.59e-08 | 171 |
ectoderm | 5.59e-08 | 171 |
presumptive ectoderm | 5.59e-08 | 171 |
central nervous system | 2.28e-07 | 81 |
neural plate | 2.53e-07 | 82 |
presumptive neural plate | 2.53e-07 | 82 |
ectodermal placode | 4.52e-07 | 31 |
neurectoderm | 5.87e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.61e-14 | 1 |
extraosseous chondrosarcoma | 1.61e-14 | 1 |
myxoid chondrosarcoma | 1.61e-14 | 1 |
extraskeletal myxoid chondrosarcoma | 1.61e-14 | 1 |