FFCP PHASE1:Hg19::chr20:43104541..43104576,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:43104541..43104576,+
|short_description=p2@TTPAL
|description=CAGE_peak_2_at_TTPAL_5end
|association_with_transcript=0bp_to_ENST00000372906,ENST0000045631...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79183 | |EntrezGene=79183 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16114 | |HGNC=16114 | ||
|TSSclassifier=strong | |||
|UniProt=A6PVK2,Q5QPC2,Q9BTX7 | |UniProt=A6PVK2,Q5QPC2,Q9BTX7 | ||
|association_with_transcript=0bp_to_ENST00000372906,ENST00000456317,NM_001039199,NM_024331,uc002xmc.1,uc002xmd.1_5end | |||
|cluster_id=chr20:43104541..43104576,+ | |||
|description=CAGE_peak_2_at_TTPAL_5end | |||
|id=chr20:43104541..43104576,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.20e-15!679;CL:0000004!1.20e-15!679;CL:0000255!1.20e-15!679;CL:0000012!6.04e-15!682;CL:0000144!1.30e-14!625;CL:0002371!6.76e-14!591;CL:0000055!5.36e-13!180;CL:0000680!7.97e-10!57;CL:0000056!7.97e-10!57;CL:0000355!7.97e-10!57;CL:0000057!3.91e-09!75;CL:0000187!1.03e-08!54;CL:0000183!2.62e-08!59;CL:0000220!1.65e-07!246;CL:0000192!2.29e-07!42;CL:0000514!2.29e-07!42;CL:0000393!3.23e-07!60;CL:0000211!3.23e-07!60;CL:0002321!4.68e-07!248;CL:0000359!5.10e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.33e-07;33!CL:0002057;3.33e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,4.09e-10,58;CL:0000056,4.09e-10,58;CL:0000355,4.09e-10,58;CL:0000057,2.42e-09,76;CL:0000187,5.38e-09,55;CL:0000192,1.20e-07,43;CL:0000514,1.20e-07,43;CL:0000393,1.78e-07,61;CL:0000211,1.78e-07,61;CL:0002321,3.47e-07,250;CL:0000359,5.10e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.02e-12!83;UBERON:0002329!4.02e-12!83;UBERON:0003077!4.02e-12!83;UBERON:0003059!4.02e-12!83;UBERON:0007282!4.02e-12!83;UBERON:0009618!4.02e-12!83;UBERON:0007285!4.02e-12!83;UBERON:0000486!2.55e-11!82;UBERON:0005256!3.36e-11!143;UBERON:0004290!2.37e-09!70;UBERON:0002100!1.03e-08!216;UBERON:0001134!3.81e-08!61;UBERON:0002036!3.81e-08!61;UBERON:0003082!3.81e-08!61;UBERON:0000475!3.94e-08!365;UBERON:0003104!1.31e-07!238;UBERON:0009142!1.31e-07!238;UBERON:0003102!2.56e-07!95;UBERON:0002385!3.53e-07!63;UBERON:0001015!3.53e-07!63;UBERON:0000383!3.53e-07!63;UBERON:0000490!9.87e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.25e-11,83;UBERON:0005256,2.34e-10,122;UBERON:0003077,8.98e-10,72;UBERON:0007285,8.98e-10,72;UBERON:0007524,9.55e-10,73;UBERON:0003104,1.12e-09,160;UBERON:0009142,1.12e-09,160;UBERON:0002329,1.20e-09,71;UBERON:0003059,1.20e-09,71;UBERON:0007282,1.20e-09,71;UBERON:0004290,1.20e-09,71;UBERON:0009618,1.20e-09,71;UBERON:0007503,5.03e-09,78;UBERON:0003102,1.74e-08,99;UBERON:0001134,1.95e-08,62;UBERON:0002036,1.95e-08,62;UBERON:0003082,1.95e-08,62;UBERON:0000490,5.35e-08,148;UBERON:0002385,1.87e-07,64;UBERON:0001015,1.87e-07,64;UBERON:0000383,1.87e-07,64;UBERON:0002100,4.00e-07,199;UBERON:0002199,9.14e-07,46;UBERON:0002416,9.14e-07,46 | |||
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| ||
|short_description=p2@TTPAL | |||
}} | }} |
Latest revision as of 08:05, 16 September 2015
Short description: | p2@TTPAL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TTPAL_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372906, ENST00000456317, NM_001039199, NM_024331, uc002xmc.1, uc002xmd.1_5end |
EntrezGene: | TTPAL |
HGNC: | 16114 |
UniProt: | A6PVK2Q5QPC2Q9BTX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 4.09e-10 | 58 |
myoblast | 4.09e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.09e-10 | 58 |
fibroblast | 2.42e-09 | 76 |
muscle cell | 5.38e-09 | 55 |
smooth muscle cell | 1.20e-07 | 43 |
smooth muscle myoblast | 1.20e-07 | 43 |
electrically responsive cell | 1.78e-07 | 61 |
electrically active cell | 1.78e-07 | 61 |
embryonic cell | 3.47e-07 | 250 |
vascular associated smooth muscle cell | 5.10e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.25e-11 | 83 |
trunk mesenchyme | 2.34e-10 | 122 |
paraxial mesoderm | 8.98e-10 | 72 |
presumptive paraxial mesoderm | 8.98e-10 | 72 |
dense mesenchyme tissue | 9.55e-10 | 73 |
mesenchyme | 1.12e-09 | 160 |
entire embryonic mesenchyme | 1.12e-09 | 160 |
somite | 1.20e-09 | 71 |
presomitic mesoderm | 1.20e-09 | 71 |
presumptive segmental plate | 1.20e-09 | 71 |
dermomyotome | 1.20e-09 | 71 |
trunk paraxial mesoderm | 1.20e-09 | 71 |
epithelial vesicle | 5.03e-09 | 78 |
surface structure | 1.74e-08 | 99 |
skeletal muscle tissue | 1.95e-08 | 62 |
striated muscle tissue | 1.95e-08 | 62 |
myotome | 1.95e-08 | 62 |
unilaminar epithelium | 5.35e-08 | 148 |
muscle tissue | 1.87e-07 | 64 |
musculature | 1.87e-07 | 64 |
musculature of body | 1.87e-07 | 64 |
trunk | 4.00e-07 | 199 |
integument | 9.14e-07 | 46 |
integumental system | 9.14e-07 | 46 |