FFCP PHASE1:Hg19::chr3:157823517..157823562,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:157823517..157823562,- to FFCP PHASE1:Hg19::chr3:157823517..157823562,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6474 | |EntrezGene=6474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10854 | |HGNC=10854 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000555977_5end | |||
|cluster_id=chr3:157823517..157823562,- | |||
|description=CAGE_peak_1_at_SHOX2_5end | |||
|id=chr3:157823517..157823562,- | |||
|ontology_enrichment_celltype=CL:0000055!5.97e-26!180;CL:0000057!8.44e-19!75;CL:0002620!4.60e-14!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;9.34e-18;23!CL:0000057;2.72e-08;73!CL:0000062;2.66e-07;9!CL:0000153;4.79e-07;9!CL:0000447;4.79e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.76e-21,76;CL:0002620,6.17e-18,23;CL:0000062,3.99e-08,11;CL:0000375,3.99e-08,11;CL:0000335,3.99e-08,11;CL:0000723,2.23e-07,433;CL:0000048,3.31e-07,427;CL:0000153,5.71e-07,9;CL:0000447,5.71e-07,9;CL:0000219,7.21e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000335;2.95e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1115;3.43e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:1115,3.23e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0002199!9.80e-16!45;UBERON:0002416!9.80e-16!45;UBERON:0002097!1.33e-15!40;UBERON:0003102!1.63e-10!95;UBERON:0000914!2.45e-09!83;UBERON:0002329!2.45e-09!83;UBERON:0003077!2.45e-09!83;UBERON:0003059!2.45e-09!83;UBERON:0007282!2.45e-09!83;UBERON:0009618!2.45e-09!83;UBERON:0007285!2.45e-09!83;UBERON:0004290!1.14e-08!70;UBERON:0000486!1.22e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;1.19e-16;41!UBERON:0002199;9.34e-14;46!UBERON:0002416;9.34e-14;46!UBERON:0003102;5.43e-12;50!UBERON:0001474;6.34e-09;18!UBERON:0002067;4.70e-08;9!UBERON:0001434;2.65e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.18e-22,41;UBERON:0002199,9.22e-22,46;UBERON:0002416,9.22e-22,46;UBERON:0003102,2.01e-11,99;UBERON:0002067,3.85e-08,9;UBERON:0004016,3.85e-08,9;UBERON:0010083,3.85e-08,9;UBERON:0007524,4.37e-08,73;UBERON:0002329,7.99e-08,71;UBERON:0003059,7.99e-08,71;UBERON:0007282,7.99e-08,71;UBERON:0004290,7.99e-08,71;UBERON:0009618,7.99e-08,71;UBERON:0000486,1.15e-07,83;UBERON:0003077,1.47e-07,72;UBERON:0007285,1.47e-07,72 | |||
|phase1_expression=5.63202975738726,8.34992043174834,0.845726424575827,3.00219895059391,0.893922188854576,0,0,0.631719873426831,4.70134130759709,0,0,0,0,0.247532705920093,0,4.03395087871065,4.82155622419182,6.57279081348636,4.87932798790507,0,0,0,0.286235987131057,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290796477559129,0,0,0,0.411167888021826,0.309706370895104,0.28769239232215,0,0,0.689491361473237,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,0.511450247374121,2.53007406669196,7.52006865953834,4.49024208778554,6.36228757640879,7.78615792484217,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,8.94549513051573,3.92554586160197,0.794455084879313,0.860509862246441,1.77334191099179,0,1.06748995729705,0.49333509683432,2.48968828319813,1.0776853765575,1.63461903113459,0,0,3.51482147750695,6.86752169026705,2.85235910772225,4.03511437489863,5.63685593490071,6.96053660782966,5.75848307479219,11.0243252477642,3.19369225010597,15.0855640516618,5.94001428641027,3.21447008062124,0,0,5.38675564653012,2.87772595705518,10.2513722729148,1.31693286264251,1.22595118319608,3.60571341375832,1.24775401476023,7.71375433462106,14.9490172172997,4.66250182551036,6.00182192168805,8.55335992679043,12.1091053821446,10.422543954569,1.68776332241266,2.53336213419116,5.3011092591264,11.2300876343605,4.20279747728911,4.9701342952326,9.87370562630875,6.78242369241951,0,0,0,0,0,0,0,0,0,7.8224766164908,9.64861407289328,12.4321429217232,18.5747171212792,10.8281922250438,0,0,0.482022059766964,0.441175890929576,0,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0.651616610620649,0,1.44331342025273,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0.16798212819886,0,0,0,0,4.43396914106349,0.44024217006613,0,0.144119953416961,0.25248486685276,0.063497894292169,0,0,3.4214489204541,0.205654985406647,0,0,0,0.43596006883328,0.1466765716419,0,10.7296933755565,2.535908257668,0,0,5.91576960802927,1.41849132023278,2.39779961114489,0,0,0,5.21177894869976,0,0,0.602878754119172,0,0.199945982364114,0,0,2.10833939483032,0,0,4.27910715122155,2.31650090668127,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,7.07100929204744,4.81758269752337,10.8814666373415,8.08275763449721,6.3198680942821,2.27407504055985,1.03473071292505,3.32112799267718,3.87175253937577,11.6424043387231,0,0,0,0,0,0,0,0.30239029332968,7.19512642674453,4.14347327877769,7.57782254969299,0.256278298511402,0,0.160853921143607,0,1.23367755042124,3.01854933032316,3.85997633264903,5.71179872101983,1.97557643381931,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,9.43165487628937,11.7988584886441,3.44559322797703,0,1.6068392984416,2.51343867559517,1.3864375540318,1.38153307253517,1.10269257987624,10.6346042419591,5.51063436874068,1.02271952899321,1.86967274858148,0,0,0,0,1.39453664789186,0.94443704049192,0,2.46426864140871,3.19383618190213,0,0.37064843820784,3.00562262158182,0.372158369359667,0,0.190630193923825,1.02359116524534,0.855877976067841,1.27281299170375,1.56989728039846,0.899362287916574,0.54907405947211,1.06031162111118,2.42618977887979,0,3.79132610615083,0,1.70599442741899,1.05650146756755,0.272999822815972,0,1.13008116620243,2.75682671773062,0.66343897524122,1.75380354101505,2.89387767133344,1.9676842561399,0,0.6196469961995,0.563391205064483,0,0,0,2.12856638442359,7.17765960012058,5.59801318031833,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,1.92283328029452,3.84991942105343,0.490080431962063,0,0,0,0,0,0,0.423347165447766,0,0.561594356226918,6.61880569196257,0,0,1.01575066680962,0,0.403599414382095,0,0,6.14481528616916,6.26293102098765,6.00656910162871,0.19538809540204,1.11362469558097,4.92349595790849,2.97501246323581,0,1.4098700508785,0,4.10222901961303,0,0.557216921387392,3.12549761487054,0,0,0,0,0,9.79516604201572,0.16480387422676,0,1.19548792950642,0.276283915531148,9.06957892275394,1.1249555075237,0.123084805461069,9.95326680517784,0.718946809178615,0.895105873378046,3.5810065915881,0.493217028184668,0,8.89095921157095,0,0.0927680981618513,0,0.260427761085233,0,4.34999745260876,0.1137934482855,0.254253650292766,0.236387681767936,3.10269035917318,1.16641845353302,0,0,0,0,0,0,0.658156191461918,0.21787692703798,0,3.07801034015188,4.67162428972705,0,0.448788222048861,0,0.638002319463839,1.19076871422421,0,0,0,6.14983223030579,2.03036094555463,1.76456280885966,2.3495022176618,2.08729105996604,0,4.00896322603251,0.163232808159148,0.141353071433941,1.08194319871046,0,0.176915129006678,0,0.296521128680622,0.988511511572023,0.417687798021821,1.28062152663286,0,3.27970224015475,0,0,2.91336455440911,0.789168805698781,0,0,0.252746318513952,0.751617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| 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| ||
|short_description=p1@SHOX2 | |||
}} | }} |
Latest revision as of 08:12, 16 September 2015
Short description: | p1@SHOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHOX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000555977_5end |
EntrezGene: | SHOX2 |
HGNC: | 10854 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.76e-21 | 76 |
skin fibroblast | 6.17e-18 | 23 |
osteoblast | 3.99e-08 | 11 |
osteoprogenitor cell | 3.99e-08 | 11 |
mesenchyme condensation cell | 3.99e-08 | 11 |
somatic stem cell | 2.23e-07 | 433 |
multi fate stem cell | 3.31e-07 | 427 |
GAG secreting cell | 5.71e-07 | 9 |
carbohydrate secreting cell | 5.71e-07 | 9 |
motile cell | 7.21e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.18e-22 | 41 |
integument | 9.22e-22 | 46 |
integumental system | 9.22e-22 | 46 |
surface structure | 2.01e-11 | 99 |
dermis | 3.85e-08 | 9 |
dermatome | 3.85e-08 | 9 |
future dermis | 3.85e-08 | 9 |
dense mesenchyme tissue | 4.37e-08 | 73 |
somite | 7.99e-08 | 71 |
presomitic mesoderm | 7.99e-08 | 71 |
presumptive segmental plate | 7.99e-08 | 71 |
dermomyotome | 7.99e-08 | 71 |
trunk paraxial mesoderm | 7.99e-08 | 71 |
multilaminar epithelium | 1.15e-07 | 83 |
paraxial mesoderm | 1.47e-07 | 72 |
presumptive paraxial mesoderm | 1.47e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 3.23e-07 | 20 |