FFCP PHASE1:Hg19::chr1:235324530..235324613,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23029 | |EntrezGene=23029 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28965 | |HGNC=28965 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TCT4,P42696 | |UniProt=Q5TCT4,P42696 | ||
|association_with_transcript=0bp_to_ENST00000366606,ENST00000400947,ENST00000429912,ENST00000447801,ENST00000474086,ENST00000476261,ENST00000485019,ENST00000486751,NM_001161533,NM_015014,NR_027762_5end | |association_with_transcript=0bp_to_ENST00000366606,ENST00000400947,ENST00000429912,ENST00000447801,ENST00000474086,ENST00000476261,ENST00000485019,ENST00000486751,NM_001161533,NM_015014,NR_027762_5end | ||
|cluster_id=chr1:235324530..235324613,- | |||
|description=CAGE_peak_1_at_RBM34_5end | |description=CAGE_peak_1_at_RBM34_5end | ||
|id=chr1:235324530..235324613,- | |id=chr1:235324530..235324613,- | ||
|ontology_enrichment_celltype=CL:0000542!1.37e-21!53;CL:0000051!1.37e-21!53;CL:0000838!2.96e-21!52;CL:0000037!1.62e-11!172;CL:0000566!1.62e-11!172;CL:0000084!1.72e-10!25;CL:0000827!1.72e-10!25;CL:0000988!2.58e-10!182;CL:0000945!2.65e-10!24;CL:0000826!2.65e-10!24;CL:0000791!3.86e-10!18;CL:0000789!3.86e-10!18;CL:0002420!3.86e-10!18;CL:0002419!3.86e-10!18;CL:0000790!3.86e-10!18;CL:0002032!7.62e-10!165;CL:0000837!7.62e-10!165;CL:0000738!1.69e-07!140;CL:0000236!2.48e-07!14;CL:0000625!6.41e-07!11 | |ontology_enrichment_celltype=CL:0000542!1.37e-21!53;CL:0000051!1.37e-21!53;CL:0000838!2.96e-21!52;CL:0000037!1.62e-11!172;CL:0000566!1.62e-11!172;CL:0000084!1.72e-10!25;CL:0000827!1.72e-10!25;CL:0000988!2.58e-10!182;CL:0000945!2.65e-10!24;CL:0000826!2.65e-10!24;CL:0000791!3.86e-10!18;CL:0000789!3.86e-10!18;CL:0002420!3.86e-10!18;CL:0002419!3.86e-10!18;CL:0000790!3.86e-10!18;CL:0002032!7.62e-10!165;CL:0000837!7.62e-10!165;CL:0000738!1.69e-07!140;CL:0000236!2.48e-07!14;CL:0000625!6.41e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000542;1.51e-12;53!CL:0000084;1.80e-10;25!CL:0000945;2.54e-10;24!CL:0000791;3.84e-10;18!CL:0000789;3.84e-10;18!CL:0002419;3.84e-10;18!CL:0000236;1.38e-07;13!CL:0000625;6.30e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.37e-21,53;CL:0000051,1.37e-21,53;CL:0000838,2.96e-21,52;CL:0000037,7.90e-11,168;CL:0000084,1.72e-10,25;CL:0000827,1.72e-10,25;CL:0000945,2.65e-10,24;CL:0000826,2.65e-10,24;CL:0000791,3.86e-10,18;CL:0000789,3.86e-10,18;CL:0002420,3.86e-10,18;CL:0002419,3.86e-10,18;CL:0000790,3.86e-10,18;CL:0000988,4.45e-10,177;CL:0002032,3.37e-09,161;CL:0000837,3.37e-09,161;CL:0000236,2.48e-07,14;CL:0000625,6.41e-07,11;CL:0000738,6.53e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;1.51e-12;53!CL:0000790;3.84e-10;18 | |||
|ontology_enrichment_disease=DOID:162!2.24e-25!235;DOID:14566!6.16e-25!239;DOID:0050687!2.75e-16!143;DOID:0050686!4.16e-11!137;DOID:305!7.71e-11!106;DOID:2531!1.57e-09!51;DOID:0060083!1.57e-09!51;DOID:1240!2.07e-08!39;DOID:3095!8.44e-08!22;DOID:2994!8.44e-08!22;DOID:8692!9.58e-07!31 | |ontology_enrichment_disease=DOID:162!2.24e-25!235;DOID:14566!6.16e-25!239;DOID:0050687!2.75e-16!143;DOID:0050686!4.16e-11!137;DOID:305!7.71e-11!106;DOID:2531!1.57e-09!51;DOID:0060083!1.57e-09!51;DOID:1240!2.07e-08!39;DOID:3095!8.44e-08!22;DOID:2994!8.44e-08!22;DOID:8692!9.58e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.74e-08;22!DOID:2994;7.74e-08;22!DOID:1240;4.78e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.24e-25,235;DOID:14566,6.16e-25,239;DOID:0050687,2.75e-16,143;DOID:0050686,4.16e-11,137;DOID:305,7.71e-11,106;DOID:2531,1.57e-09,51;DOID:0060083,1.57e-09,51;DOID:1240,2.07e-08,39;DOID:3095,8.44e-08,22;DOID:2994,8.44e-08,22;DOID:8692,9.58e-07,31 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p1@RBM34 | |short_description=p1@RBM34 | ||
}} | }} |
Latest revision as of 12:15, 16 September 2015
Short description: | p1@RBM34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBM34_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000366606, ENST00000400947, ENST00000429912, ENST00000447801, ENST00000474086, ENST00000476261, ENST00000485019, ENST00000486751, NM_001161533, NM_015014, NR_027762_5end |
EntrezGene: | RBM34 |
HGNC: | 28965 |
UniProt: | Q5TCT4P42696 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.37e-21 | 53 |
common lymphoid progenitor | 1.37e-21 | 53 |
lymphoid lineage restricted progenitor cell | 2.96e-21 | 52 |
hematopoietic stem cell | 7.90e-11 | 168 |
T cell | 1.72e-10 | 25 |
pro-T cell | 1.72e-10 | 25 |
lymphocyte of B lineage | 2.65e-10 | 24 |
pro-B cell | 2.65e-10 | 24 |
mature alpha-beta T cell | 3.86e-10 | 18 |
alpha-beta T cell | 3.86e-10 | 18 |
immature T cell | 3.86e-10 | 18 |
mature T cell | 3.86e-10 | 18 |
immature alpha-beta T cell | 3.86e-10 | 18 |
hematopoietic cell | 4.45e-10 | 177 |
hematopoietic oligopotent progenitor cell | 3.37e-09 | 161 |
hematopoietic multipotent progenitor cell | 3.37e-09 | 161 |
B cell | 2.48e-07 | 14 |
CD8-positive, alpha-beta T cell | 6.41e-07 | 11 |
leukocyte | 6.53e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.24e-25 | 235 |
disease of cellular proliferation | 6.16e-25 | 239 |
cell type cancer | 2.75e-16 | 143 |
organ system cancer | 4.16e-11 | 137 |
carcinoma | 7.71e-11 | 106 |
hematologic cancer | 1.57e-09 | 51 |
immune system cancer | 1.57e-09 | 51 |
leukemia | 2.07e-08 | 39 |
germ cell and embryonal cancer | 8.44e-08 | 22 |
germ cell cancer | 8.44e-08 | 22 |
myeloid leukemia | 9.58e-07 | 31 |