FFCP PHASE1:Hg19::chr10:116164922..116164943,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=84632 | |EntrezGene=84632 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=25901 | |HGNC=25901 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=F6QUH3,Q8N4X5 | |UniProt=F6QUH3,Q8N4X5 | ||
|association_with_transcript=-407bp_to_ENST00000369271,ENST00000541919,NM_001001936,NM_032550,uc001lbn.2,uc001lbo.2,uc001lbp.2,uc001lbr.1,uc010qse.1_5end | |association_with_transcript=-407bp_to_ENST00000369271,ENST00000541919,NM_001001936,NM_032550,uc001lbn.2,uc001lbo.2,uc001lbp.2,uc001lbr.1,uc010qse.1_5end | ||
|cluster_id=chr10:116164922..116164943,- | |||
|description=CAGE_peak_8_at_AFAP1L2_5end | |description=CAGE_peak_8_at_AFAP1L2_5end | ||
|id=chr10:116164922..116164943,- | |id=chr10:116164922..116164943,- | ||
Latest revision as of 12:39, 16 September 2015
| Short description: | p8@AFAP1L2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_8_at_AFAP1L2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -407bp_to_ENST00000369271, ENST00000541919, NM_001001936, NM_032550, uc001lbn.2, uc001lbo.2, uc001lbp.2, uc001lbr.1, uc010qse.1_5end |
| EntrezGene: | AFAP1L2 |
| HGNC: | 25901 |
| UniProt: | F6QUH3Q8N4X5 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p8@AFAP1L2 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 8.78e-21 | 42 |
| endodermal cell | 2.42e-14 | 58 |
| epithelial cell of alimentary canal | 4.39e-10 | 20 |
| gingival epithelial cell | 8.36e-09 | 3 |
| epithelial cell of prostate | 1.69e-08 | 3 |
| duct epithelial cell | 1.97e-08 | 3 |
| branched duct epithelial cell | 1.97e-08 | 3 |
| tracheal epithelial cell | 1.97e-08 | 3 |
| tracheoblast | 1.97e-08 | 3 |
| epithelial cell | 1.54e-07 | 253 |
Showing 1 to 10 of 11 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 2.21e-10 | 160 |
| endoderm | 2.21e-10 | 160 |
| presumptive endoderm | 2.21e-10 | 160 |
| male genital duct | 1.89e-09 | 3 |
| internal male genitalia | 1.89e-09 | 3 |
| gingival epithelium | 8.36e-09 | 3 |
| seminal vesicle | 9.91e-08 | 1 |
| seminal fluid secreting gland | 9.91e-08 | 1 |
| vas deferens | 1.06e-07 | 1 |
| spermatic cord | 1.06e-07 | 1 |
Showing 1 to 10 of 17 entries
| Ontology term | p-value | n |
|---|---|---|
| signet ring cell adenocarcinoma | 9.60e-13 | 2 |
| skin squamous cell carcinoma | 1.44e-07 | 1 |
| keratoacanthoma | 1.44e-07 | 1 |
| squamous cell carcinoma | 4.10e-07 | 14 |
Showing 1 to 4 of 4 entries
