FFCP PHASE1:Hg19::chr1:12123379..12123405,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=943 | |EntrezGene=943 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11923 | |HGNC=11923 | ||
|TSSclassifier=strong | |||
|UniProt=P28908 | |UniProt=P28908 | ||
|association_with_transcript=-28bp_to_ENST00000263932,NM_001243,uc001atq.2,uc010obc.1_5end | |association_with_transcript=-28bp_to_ENST00000263932,NM_001243,uc001atq.2,uc010obc.1_5end | ||
|cluster_id=chr1:12123379..12123405,+ | |||
|coexpression_cluster_id=C920 | |coexpression_cluster_id=C920 | ||
|description=CAGE_peak_2_at_TNFRSF8_5end | |description=CAGE_peak_2_at_TNFRSF8_5end | ||
|id=chr1:12123379..12123405,+ | |id=chr1:12123379..12123405,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.57e-08!5;CL:0000453!4.03e-08!5 | |ontology_enrichment_celltype=CL:0002322!1.57e-08!5;CL:0000453!4.03e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.13e-16;5!CL:0000453;1.29e-10;5!CL:0000039;3.42e-08;7!CL:0000586;3.42e-08;7!CL:0001014;7.82e-08;2!CL:0001016;7.82e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.32e-16,5;CL:0000988,1.68e-13,177;CL:0002032,3.35e-12,161;CL:0000837,3.35e-12,161;CL:0000037,2.25e-11,168;CL:0000453,1.12e-10,5;CL:0000838,2.11e-09,52;CL:0000542,3.65e-09,53;CL:0000051,3.65e-09,53;CL:0000039,3.39e-08,7;CL:0000586,3.39e-08,7;CL:0001014,7.31e-08,2;CL:0001016,7.31e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!3.04e-13!51;DOID:0060083!3.04e-13!51;DOID:1036!1.18e-11!8;DOID:1240!3.49e-08!39;DOID:0060058!3.80e-07!10 | |ontology_enrichment_disease=DOID:2531!3.04e-13!51;DOID:0060083!3.04e-13!51;DOID:1036!1.18e-11!8;DOID:1240!3.49e-08!39;DOID:0060058!3.80e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.06e-18;8!DOID:2531;6.87e-15;51!DOID:0060083;6.87e-15;51!DOID:1240;1.53e-13;39!DOID:8692;8.58e-10;31!DOID:0060058;1.31e-08;10!DOID:74;2.66e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.53e-22,51;DOID:0060083,2.53e-22,51;DOID:1036,1.27e-18,8;DOID:1240,7.57e-17,39;DOID:8692,6.45e-10,31;DOID:0060058,1.31e-08,10;DOID:74,2.46e-07,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.69e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.66e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,16.0468152070698,15.2707096376899,15.0337592309127,0,0,0,0,0,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0.167186495390678,0,0,0,3.23090324967003,0.294605907474837,0.443067789167242,0.270803863765016,3.0741916734162,4.55207716459574,0,0.276350017785848,0,0,0,0,1.24640276967323,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0.573673241497627,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,5.85473789422058,4.37348235460901,5.34492137199785,4.45742536566093,6.05570042101508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.44024217006613,3.93923419527467,0.576479813667846,1.38866676769018,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,1.68127715990291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0.254876273045038,0,0.671624264166535,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0.636406495851874,0,0,0,0.235624804691373,1.01091240786658,0,1.26377536871694,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0.354761064070598,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,3.50737800003409,0,1.53204296105893,4.65681881992542,0,1.12318871245384,0,1.56679895773023,0,8.63388066788177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,35.6618829687931,0,0,0,0,0,0,0,40.8713608082364,0,0,0.276283915531148,0,0,10.4622084641909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.844175070377856,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,3.06579894587209,3.1396051279005,0.166211681900156,5.18870019419516,5.48975096089671,5.53811237020281,0.189753732724185,2.54298526368606,0,0,0,0,0,0,0,18.9773522355598,30.1496011029467,28.2983483159784,0,0,0,0.182454789215666,0,0,0,0,0,0,0.901940516486955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,1.58971689362392,0,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0.600420288709789,0,0,0,24.4485239479762,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0922065006178,0,0,8.19841057171598,4.40126197111148,6.23160507043778,27.2218408777316,4.6428117273477,0,0,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,3.77625595446959,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0.60896299190448,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0.159296767163702,0,0.310525913752519,0,0.265841714557995,0,0.450772826991655,1.90402606084398,0,0,0,0.928067519756987,0.796191777397232,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,2.87202149110224,0,0,1.82315973706429,0,2.92290463259083,0.531459361253452,3.59843867362857,0,0,0,12.1992311471507,1.60037594541211,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47317047000752,0,0,0,0.642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0085253435176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,3.91795557689649,0,0,0,0,0,0,1.88538707899202,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,3.31329602045583,4.4310970474762,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0.386747327841463,14.8912322328144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.513108155165,0,15.2983244612973,17.636348747527,25.5467820706869,10.2790091109874,0.0757786982182394,0.267964130156178,0,0,0,0,0.129177819672012,0.31037357147929,0.112131862580613,0,0,0.217716747896961,0,0.336760265072938,0,0,0,0.640364075266293,0,0,0,0,0,0,0.402547587182052,20.8369519997101 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,16.0468152070698,15.2707096376899,15.0337592309127,0,0,0,0,0,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0.167186495390678,0,0,0,3.23090324967003,0.294605907474837,0.443067789167242,0.270803863765016,3.0741916734162,4.55207716459574,0,0.276350017785848,0,0,0,0,1.24640276967323,0,0,0.253019692019503,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0.573673241497627,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,5.85473789422058,4.37348235460901,5.34492137199785,4.45742536566093,6.05570042101508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0.44024217006613,3.93923419527467,0.576479813667846,1.38866676769018,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,1.68127715990291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0.254876273045038,0,0.671624264166535,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0.636406495851874,0,0,0,0.235624804691373,1.01091240786658,0,1.26377536871694,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0.354761064070598,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,3.50737800003409,0,1.53204296105893,4.65681881992542,0,1.12318871245384,0,1.56679895773023,0,8.63388066788177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,35.6618829687931,0,0,0,0,0,0,0,40.8713608082364,0,0,0.276283915531148,0,0,10.4622084641909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.844175070377856,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,3.06579894587209,3.1396051279005,0.166211681900156,5.18870019419516,5.48975096089671,5.53811237020281,0.189753732724185,2.54298526368606,0,0,0,0,0,0,0,18.9773522355598,30.1496011029467,28.2983483159784,0,0,0,0.182454789215666,0,0,0,0,0,0,0.901940516486955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,1.58971689362392,0,0,0,0,0,0,0,0,0,0.248505071130865,0,0,0,0,0,0.600420288709789,0,0,0,24.4485239479762,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0922065006178,0,0,8.19841057171598,4.40126197111148,6.23160507043778,27.2218408777316,4.6428117273477,0,0,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,3.77625595446959,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0.60896299190448,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0.159296767163702,0,0.310525913752519,0,0.265841714557995,0,0.450772826991655,1.90402606084398,0,0,0,0.928067519756987,0.796191777397232,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,2.87202149110224,0,0,1.82315973706429,0,2.92290463259083,0.531459361253452,3.59843867362857,0,0,0,12.1992311471507,1.60037594541211,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47317047000752,0,0,0,0.642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0085253435176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,3.91795557689649,0,0,0,0,0,0,1.88538707899202,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,3.31329602045583,4.4310970474762,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0.386747327841463,14.8912322328144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.513108155165,0,15.2983244612973,17.636348747527,25.5467820706869,10.2790091109874,0.0757786982182394,0.267964130156178,0,0,0,0,0.129177819672012,0.31037357147929,0.112131862580613,0,0,0.217716747896961,0,0.336760265072938,0,0,0,0.640364075266293,0,0,0,0,0,0,0.402547587182052,20.8369519997101 | ||
|short_description=p2@TNFRSF8 | |short_description=p2@TNFRSF8 | ||
}} | }} |
Latest revision as of 13:00, 16 September 2015
Short description: | p2@TNFRSF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TNFRSF8_5end |
Coexpression cluster: | C920_anaplastic_adult_hereditary_cord_hairy_immature_xeroderma |
Association with transcript: | -28bp_to_ENST00000263932, NM_001243, uc001atq.2, uc010obc.1_5end |
EntrezGene: | TNFRSF8 |
HGNC: | 11923 |
UniProt: | P28908 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.32e-16 | 5 |
hematopoietic cell | 1.68e-13 | 177 |
hematopoietic oligopotent progenitor cell | 3.35e-12 | 161 |
hematopoietic multipotent progenitor cell | 3.35e-12 | 161 |
hematopoietic stem cell | 2.25e-11 | 168 |
Langerhans cell | 1.12e-10 | 5 |
lymphoid lineage restricted progenitor cell | 2.11e-09 | 52 |
lymphocyte | 3.65e-09 | 53 |
common lymphoid progenitor | 3.65e-09 | 53 |
germ line cell | 3.39e-08 | 7 |
germ cell | 3.39e-08 | 7 |
CD1a-positive Langerhans cell | 7.31e-08 | 2 |
immature CD1a-positive Langerhans cell | 7.31e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 3.66e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.53e-22 | 51 |
immune system cancer | 2.53e-22 | 51 |
chronic leukemia | 1.27e-18 | 8 |
leukemia | 7.57e-17 | 39 |
myeloid leukemia | 6.45e-10 | 31 |
lymphoma | 1.31e-08 | 10 |
hematopoietic system disease | 2.46e-07 | 2 |