FFCP PHASE1:Hg19::chr19:19051927..19051934,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9454 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17514 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NSC5 | |||
|association_with_transcript=64bp_to_ENST00000355887,ENST00000357832_5end | |||
|cluster_id=chr19:19051927..19051934,- | |||
|description=CAGE_peak_3_at_HOMER3_5end | |||
|id=chr19:19051927..19051934,- | |||
|ontology_enrichment_celltype=CL:0000220!1.18e-16!246;CL:0002321!3.39e-16!248;CL:0000055!4.90e-15!180;CL:0000222!1.84e-14!119;CL:0000057!1.38e-09!75;CL:0002371!4.85e-09!591;CL:0002078!8.31e-09!44;CL:0000359!1.34e-08!32;CL:0000183!1.44e-08!59;CL:0000115!1.57e-08!35;CL:0000192!1.75e-08!42;CL:0000514!1.75e-08!42;CL:0002139!2.73e-08!24;CL:0000213!2.81e-08!57;CL:0000215!2.81e-08!57;CL:0000071!5.32e-08!18;CL:0002546!5.32e-08!18;CL:0000144!2.54e-07!625;CL:0000187!7.33e-07!54;CL:0000680!8.56e-07!57;CL:0000056!8.56e-07!57;CL:0000355!8.56e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000071;6.67e-12;18!CL:0000115;1.17e-11;36!CL:0002139;1.03e-10;24!CL:1000413;2.72e-10;9!CL:0002078;5.87e-09;45!CL:0000359;6.69e-09;32!CL:0002544;5.41e-08;6!CL:0000213;1.30e-07;58!CL:0000215;1.30e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,6.27e-14,36;CL:0000222,3.02e-13,121;CL:0002078,1.17e-12,45;CL:0000071,4.24e-12,18;CL:0002546,4.24e-12,18;CL:0002321,4.99e-11,250;CL:0002139,7.83e-11,24;CL:0000213,8.36e-11,58;CL:0000215,8.36e-11,58;CL:1000413,1.60e-10,9;CL:0000359,1.50e-09,32;CL:0002544,6.87e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002546;6.67e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!5.81e-19!312;UBERON:0000483!1.08e-18!309;UBERON:0001981!2.01e-16!60;UBERON:0007500!2.01e-16!60;UBERON:0004537!2.01e-16!60;UBERON:0006965!2.01e-16!60;UBERON:0000055!7.84e-16!69;UBERON:0001637!1.61e-15!42;UBERON:0003509!1.61e-15!42;UBERON:0004572!1.61e-15!42;UBERON:0002049!1.07e-14!79;UBERON:0007798!1.07e-14!79;UBERON:0004872!4.20e-14!84;UBERON:0000025!5.08e-14!194;UBERON:0000477!1.73e-13!286;UBERON:0004573!2.46e-13!33;UBERON:0004571!2.46e-13!33;UBERON:0004111!3.78e-13!241;UBERON:0000467!6.93e-13!625;UBERON:0000475!1.03e-12!365;UBERON:0000480!1.18e-12!626;UBERON:0003914!1.36e-12!118;UBERON:0000468!3.56e-12!659;UBERON:0000914!9.91e-11!83;UBERON:0002329!9.91e-11!83;UBERON:0003077!9.91e-11!83;UBERON:0003059!9.91e-11!83;UBERON:0007282!9.91e-11!83;UBERON:0009618!9.91e-11!83;UBERON:0007285!9.91e-11!83;UBERON:0000486!2.17e-10!82;UBERON:0004535!3.42e-10!110;UBERON:0001009!2.30e-09!113;UBERON:0000923!7.19e-09!604;UBERON:0005291!7.19e-09!604;UBERON:0006598!7.19e-09!604;UBERON:0002532!7.19e-09!604;UBERON:0000922!8.66e-09!612;UBERON:0002050!1.11e-08!605;UBERON:0005423!1.11e-08!605;UBERON:0004290!1.38e-08!70;UBERON:0005256!4.62e-08!143;UBERON:0001986!5.32e-08!18;UBERON:0004638!5.32e-08!18;UBERON:0004852!5.32e-08!18;UBERON:0000947!5.95e-08!21;UBERON:0010191!5.95e-08!21;UBERON:0000490!5.85e-07!138;UBERON:0000481!6.22e-07!347;UBERON:0001134!7.53e-07!61;UBERON:0002036!7.53e-07!61;UBERON:0003082!7.53e-07!61;UBERON:0002385!9.37e-07!63;UBERON:0001015!9.37e-07!63;UBERON:0000383!9.37e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.79e-16;33!UBERON:0004571;1.79e-16;33!UBERON:0001637;2.93e-15;42!UBERON:0003509;2.93e-15;42!UBERON:0004572;2.93e-15;42!UBERON:0007500;1.32e-13;56!UBERON:0001981;1.32e-13;56!UBERON:0004537;1.32e-13;56!UBERON:0004638;6.67e-12;18!UBERON:0001986;6.67e-12;18!UBERON:0004852;6.67e-12;18!UBERON:0003915;2.72e-10;9!UBERON:0004700;2.72e-10;9!UBERON:0001917;2.72e-10;9!UBERON:0000055;4.88e-10;65!UBERON:0000947;5.84e-10;21!UBERON:0010191;5.84e-10;21!UBERON:0003914;9.76e-10;74!UBERON:0000487;5.66e-09;22!UBERON:0006914;1.49e-08;25!UBERON:0003513;4.10e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007500,1.52e-21,59;UBERON:0001981,1.52e-21,59;UBERON:0004537,1.52e-21,59;UBERON:0006965,1.52e-21,59;UBERON:0001637,1.46e-20,42;UBERON:0003509,1.46e-20,42;UBERON:0004572,1.46e-20,42;UBERON:0000055,1.64e-19,68;UBERON:0004872,5.02e-18,83;UBERON:0004573,6.44e-18,33;UBERON:0004571,6.44e-18,33;UBERON:0003914,1.04e-16,117;UBERON:0002049,2.34e-16,78;UBERON:0007798,2.34e-16,78;UBERON:0004535,7.32e-13,109;UBERON:0001009,3.76e-12,112;UBERON:0004638,4.24e-12,18;UBERON:0001986,4.24e-12,18;UBERON:0004852,4.24e-12,18;UBERON:0000483,4.53e-12,306;UBERON:0000119,1.03e-11,309;UBERON:0000025,1.30e-11,192;UBERON:0004111,1.50e-11,240;UBERON:0003915,1.60e-10,9;UBERON:0004700,1.60e-10,9;UBERON:0001917,1.60e-10,9;UBERON:0000947,6.59e-10,21;UBERON:0010191,6.59e-10,21;UBERON:0000487,3.96e-09,22;UBERON:0006914,1.17e-08,25;UBERON:0007503,9.27e-08,78;UBERON:0003513,4.59e-07,7 | |||
|phase1_expression=1.81678379270557,0.642301571672949,0.281908808191942,0,1.34088328328186,0,0,0,0,0.737201809504527,1.39560233594486,1.31064823278103,0,0.247532705920093,0.331397375727916,2.01697543935533,1.20538905604795,0.730310090387373,1.46379839637152,0.492484232307152,1.63200552995402,0.626909442956176,0.286235987131057,0.821246550437305,0.251085279189606,0,0,0,0,0,0,1.83884244895785,0.90361775633475,0.739508020333575,0,0,0,0,0.200544447470142,0,0,0,0,0.726991193897824,1.13362783106643,0,0.464858073811369,1.23350366406548,0.929119112685311,0.28769239232215,0.512321413058201,0.709446689665756,0.344745680736619,0.645484683583826,0,0.941211697713023,0.272906150057846,1.12361742222542,0,0.320929027076094,0,0.329851300186716,0.199463657621632,0.426224750532694,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0.50133791063589,0.869079113764942,0.795285947051099,1.45990461090791,0.189069634328136,0.221729397462564,0.351339142772504,0.327447688744282,1.09288586487763,2.22470665670658,0,0,0.132957960518865,0,0,0,1.39133685156694,2.58070378531837,3.12426451446835,2.82653970962005,1.25849830862972,1.6507082516404,1.8809546988313,0.258416759169329,0,3.01248551488203,12.4877088303836,2.28081631715554,14.399661395342,1.10298924103761,2.43042584364528,0.446498641420399,0.673588117878509,0.450445921933289,0,2.84779697870439,2.38162267109529,0,0,0.436094052142534,0.993943903390637,1.13967460498122,0.397227542439656,0.573673241497627,2.12801029319014,1.12135520028461,1.06748995729705,0.98667019366864,0.311211035399766,1.61652806483626,1.30769522490767,0.302714855289863,0.576175924479999,0.234321431833797,1.87296046098192,2.85235910772225,1.34503812496621,0.352303495931295,0.161872944368132,0.140450806702248,0.61246251376468,0.737005903870608,1.03325781175765,2.37600571456411,0.247266929278557,0.910161361938026,0,0.168336113954066,0.375355559615893,1.93944880838928,1.31693286264251,0.612975591598039,1.35214253015937,1.24775401476023,0.179389635688862,0.213557388818567,0.635795703478686,0.300091096084402,0.618315175430633,0.515281080091258,0.18611685633159,0.506328996723799,1.07180705677318,0.504867548488229,0.184099797284599,1.45481451136931,0.355009592516614,0.806016785821122,1.3564847384839,3.09217365061275,1.09098448236334,4.01526433544605,0.121973706129595,0,0.232387885739037,0.621966330092223,0.252320850875628,0.36497735907583,3.12899064659632,0.643240938192885,2.76269842704961,0.464367928031979,2.16563844500876,0.354920400119532,0.337169380156203,0.482022059766964,0.220587945464788,1.30727666455444,0,0.808987848960987,0.784885860501384,0,3.69077727312324,4.20725321410337,0,1.47008711385542,0,0,0.590789906681404,0,0.368965315629341,0.171567810298526,2.19500570817251,2.24803506515239,0.301586917234893,0.462942225792648,0.651616610620649,0,0,0.811512834825538,0.352226082707465,1.29929802984966,0.925971025153221,0.951270761172991,0,0,1.96973604869918,0.234004265139238,0.891786973732369,2.81201501960331,1.84780341018745,1.13420077793909,1.16426079513703,0.581267877027924,3.06706143332169,0.492663237895943,0.264145302039678,0.414656231081544,0.432359860250884,0.37872730027914,0.317489471460845,0.381988425558278,0,0,0.411309970813294,0.300343057843917,1.42913216315289,0.336393253036082,0.87192013766656,0.2933531432838,0.517086863031111,7.15312891703765,0.845302752556,1.06375246633948,3.12022310734098,0.257207374262142,0,0.799266537048298,0.285955987316295,0,0.823240336780769,0.325736184293735,0,0.791951872933429,1.20575750823834,1.74306691720059,0.99972991182057,0,0,0,0.239624855491583,1.14861935834114,0,1.15825045334063,0,0.537182889719687,0,0,0,0,0.508189248444927,0,0,0.502548796003046,0.637938751653163,0,0,0,0.12269149171914,0,0,2.49565033836969,3.56857977594324,2.20783381047509,0.937131319941706,0.300946099727719,0,2.0694614258501,1.99267679560631,1.29058417979192,0.260650843404249,1.56640925970192,1.02943027143257,0,0,0,0.303127571446259,0,0.30239029332968,1.98486246255021,1.68808170616869,2.24528075546459,0.640695746278505,0.511707249066704,0.482561763430822,1.48418066444991,1.07946785661859,1.59805552781814,0.328508624055237,1.03850885836724,1.04589340613963,0.120859449591622,4.0101294060657,0.184161977871793,0.229628896329213,1.0925470080403,0.655622074797121,0.451199612907412,0.308061348417659,1.56869953835371,1.46139224653261,0.316654886678627,2.27466768141793,1.19065593693561,0.647747748306418,3.08454505380579,1.89662506280697,2.50844886927427,0.254876273045038,0.831076008928724,1.11937377361089,0,0,1.02580050046556,0.984043937099117,0.650756789328606,0.206082023295445,0.183138929636687,0,2.87132768998086,0.650060246036521,0,0.386682873168488,0.924291702687866,0.921022048356777,0.275673144969061,0.107420244868274,0.290033387828457,0.340906509664404,0.623224249527161,1.65284915360978,2.49847087574638,0.765676274967505,0.809262246844399,1.39453664789186,0.31481234683064,1.3940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| |||
|short_description=p3@HOMER3 | |||
}} |
Latest revision as of 18:59, 16 September 2015
Short description: | p3@HOMER3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOMER3_5end |
Coexpression cluster: | NA |
Association with transcript: | 64bp_to_ENST00000355887, ENST00000357832_5end |
EntrezGene: | HOMER3 |
HGNC: | 17514 |
UniProt: | Q9NSC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 6.27e-14 | 36 |
mesodermal cell | 3.02e-13 | 121 |
meso-epithelial cell | 1.17e-12 | 45 |
blood vessel endothelial cell | 4.24e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.24e-12 | 18 |
embryonic cell | 4.99e-11 | 250 |
endothelial cell of vascular tree | 7.83e-11 | 24 |
lining cell | 8.36e-11 | 58 |
barrier cell | 8.36e-11 | 58 |
endothelial cell of artery | 1.60e-10 | 9 |
vascular associated smooth muscle cell | 1.50e-09 | 32 |
aortic endothelial cell | 6.87e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
epithelial tube open at both ends | 1.52e-21 | 59 |
blood vessel | 1.52e-21 | 59 |
blood vasculature | 1.52e-21 | 59 |
vascular cord | 1.52e-21 | 59 |
artery | 1.46e-20 | 42 |
arterial blood vessel | 1.46e-20 | 42 |
arterial system | 1.46e-20 | 42 |
vessel | 1.64e-19 | 68 |
splanchnic layer of lateral plate mesoderm | 5.02e-18 | 83 |
systemic artery | 6.44e-18 | 33 |
systemic arterial system | 6.44e-18 | 33 |
epithelial tube | 1.04e-16 | 117 |
vasculature | 2.34e-16 | 78 |
vascular system | 2.34e-16 | 78 |
cardiovascular system | 7.32e-13 | 109 |
circulatory system | 3.76e-12 | 112 |
blood vessel endothelium | 4.24e-12 | 18 |
endothelium | 4.24e-12 | 18 |
cardiovascular system endothelium | 4.24e-12 | 18 |
epithelium | 4.53e-12 | 306 |
cell layer | 1.03e-11 | 309 |
tube | 1.30e-11 | 192 |
anatomical conduit | 1.50e-11 | 240 |
endothelial tube | 1.60e-10 | 9 |
arterial system endothelium | 1.60e-10 | 9 |
endothelium of artery | 1.60e-10 | 9 |
aorta | 6.59e-10 | 21 |
aortic system | 6.59e-10 | 21 |
simple squamous epithelium | 3.96e-09 | 22 |
squamous epithelium | 1.17e-08 | 25 |
epithelial vesicle | 9.27e-08 | 78 |
trunk blood vessel | 4.59e-07 | 7 |