FFCP PHASE1:Hg19::chr4:177713788..177713805,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7424 | |EntrezGene=7424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12682 | |HGNC=12682 | ||
|TSSclassifier=strong | |||
|UniProt=P49767 | |UniProt=P49767 | ||
|association_with_transcript=75bp_to_ENST00000280193_5end | |association_with_transcript=75bp_to_ENST00000280193_5end | ||
|cluster_id=chr4:177713788..177713805,- | |||
|coexpression_cluster_id=C2788 | |coexpression_cluster_id=C2788 | ||
|description=CAGE_peak_6_at_VEGFC_5end | |description=CAGE_peak_6_at_VEGFC_5end | ||
|id=chr4:177713788..177713805,- | |id=chr4:177713788..177713805,- | ||
|ontology_enrichment_celltype=CL:0002334;1.37e-11;12!CL:0000057;1.35e-07;73!CL:0000359;1.99e-07;32!CL:0002620;3.13e-07;23!CL:0000192;7.17e-07;43 | |ontology_enrichment_celltype=CL:0000055!2.85e-29!180;CL:0000057!3.70e-19!75;CL:0000680!6.42e-12!57;CL:0000056!6.42e-12!57;CL:0000355!6.42e-12!57;CL:0000192!1.08e-10!42;CL:0000514!1.08e-10!42;CL:0000187!2.91e-10!54;CL:0000183!1.03e-09!59;CL:0000220!1.09e-09!246;CL:0002321!2.76e-09!248;CL:0000222!4.68e-09!119;CL:0002620!8.87e-09!23;CL:0002334!2.24e-08!12;CL:0000359!3.24e-08!32;CL:0000393!5.94e-08!60;CL:0000211!5.94e-08!60 | ||
| | |ontology_enrichment_celltype_v019=CL:0002334;1.37e-11;12!CL:0000057;1.35e-07;73!CL:0000359;1.99e-07;32!CL:0002620;3.13e-07;23!CL:0000192;7.17e-07;43 | ||
|ontology_enrichment_disease=DOID:2394;1.87e-11;14 | |ontology_enrichment_celltype_v019_2=CL:0000057,4.88e-17,76;CL:0002334,5.11e-12,12;CL:0000192,1.71e-08,43;CL:0000514,1.71e-08,43;CL:0000680,3.29e-08,58;CL:0000056,3.29e-08,58;CL:0000355,3.29e-08,58;CL:0000359,1.26e-07,32;CL:0002620,3.30e-07,23;CL:0000723,7.06e-07,433 | ||
|ontology_enrichment_uberon=UBERON:0002097;8.53e-07;41 | |ontology_enrichment_development_v019=CL:0000514;7.17e-07;43 | ||
|ontology_enrichment_disease=DOID:2394!1.11e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.87e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.04e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.75e-17!83;UBERON:0002329!2.75e-17!83;UBERON:0003077!2.75e-17!83;UBERON:0003059!2.75e-17!83;UBERON:0007282!2.75e-17!83;UBERON:0009618!2.75e-17!83;UBERON:0007285!2.75e-17!83;UBERON:0000486!8.85e-17!82;UBERON:0002100!7.18e-15!216;UBERON:0003102!2.69e-14!95;UBERON:0005256!6.56e-14!143;UBERON:0004290!1.61e-13!70;UBERON:0000475!3.93e-13!365;UBERON:0001134!2.57e-11!61;UBERON:0002036!2.57e-11!61;UBERON:0003082!2.57e-11!61;UBERON:0002385!2.71e-11!63;UBERON:0001015!2.71e-11!63;UBERON:0000383!2.71e-11!63;UBERON:0003104!2.21e-09!238;UBERON:0009142!2.21e-09!238;UBERON:0002097!1.47e-08!40;UBERON:0002199!4.99e-08!45;UBERON:0002416!4.99e-08!45;UBERON:0001637!5.56e-08!42;UBERON:0003509!5.56e-08!42;UBERON:0004572!5.56e-08!42;UBERON:0000481!8.16e-08!347;UBERON:0000490!8.60e-08!138;UBERON:0000468!1.75e-07!659;UBERON:0004119!9.75e-07!169;UBERON:0000925!9.75e-07!169;UBERON:0006595!9.75e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;8.53e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,5.02e-11,83;UBERON:0003102,4.43e-10,99;UBERON:0007503,6.80e-09,78;UBERON:0002329,2.25e-08,71;UBERON:0003059,2.25e-08,71;UBERON:0007282,2.25e-08,71;UBERON:0004290,2.25e-08,71;UBERON:0009618,2.25e-08,71;UBERON:0003077,4.01e-08,72;UBERON:0007285,4.01e-08,72;UBERON:0002199,6.06e-08,46;UBERON:0002416,6.06e-08,46;UBERON:0007524,7.02e-08,73;UBERON:0001134,9.11e-08,62;UBERON:0002036,9.11e-08,62;UBERON:0003082,9.11e-08,62;UBERON:0002097,1.02e-07,41;UBERON:0002385,2.93e-07,64;UBERON:0001015,2.93e-07,64;UBERON:0000383,2.93e-07,64 | |||
|phase1_expression=3.08853244759946,3.63970890614671,1.83240725324762,4.00293193412522,0.446961094427288,0.872338524100369,0,0,0,2.45733936501509,0,0,0.263766978228454,1.8564952944007,0.662794751455832,0,2.41077811209591,0.730310090387373,3.90346239032406,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94826728407911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,1.0843174571537,0.50133791063589,0.869079113764942,0,7.29952305453954,0.189069634328136,0.443458794925128,0.43917392846563,0.458426764241994,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.993812036833525,0,0,0.56530794192401,0,0.825354125820202,0.208994966536811,0,0.35576626268671,0,0,0,0,0.367663080345869,0.81014194788176,0.267899184852239,0.44905874525234,0.900891843866578,0,0,0.549605231791222,0,0,0.436094052142534,4.96971951695318,0.759783069987479,2.91300197789081,0.860509862246441,1.06400514659507,1.12135520028461,0,1.2333377420858,0.622422070799533,0.134710672069688,0.163461903113459,0,0,0.234321431833797,0.936480230490962,2.85235910772225,2.39117888882882,0.822041490506354,0.161872944368132,0.421352420106746,0.408308342509787,0.737005903870608,0.929932030581889,2.37600571456411,5.43987244412825,0,2.87447256726495,1.0100166837244,2.12701483782339,1.6623846929051,2.63386572528503,1.83892677479412,3.00476117813194,0.453728732640084,1.61450672119976,2.13557388818567,1.05965950579781,3.00091096084402,1.75189299705346,0.772921620136887,2.04728541964749,4.55696097051419,1.85130309806277,2.01947019395292,2.48534726334208,0.80823028409406,2.4850671476163,1.61203357164224,2.7129694769678,1.93260853163297,3.00020732649918,1.43402297694502,0,0,0.116193942869518,0.207322110030741,0,0,7.8224766164908,0.643240938192885,1.38134921352481,0,0.721879481669586,0.118306800039844,0.168584690078102,0,0.110293972732394,0.435758888184812,0.237270619111097,0,0.196221465125346,0.38474715694639,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0,1.18157981336281,0,0,0.514703430895577,0.109750285408626,1.1240175325762,2.51322431029077,1.20364978706088,0.651616610620649,2.07986957055916,0,0,0.352226082707465,0.144366447761074,0,0.190254152234598,0,0,0,0,0,6.56136837907439,3.35964256397719,1.70130116690864,0.447792613514241,0.581267877027924,1.15014803749563,0.492663237895943,0,0,0,0,0.063497894292169,0,0,0,0.308482478109971,0,0,0.112131084345361,0,0.22001485746285,6.72212921940444,0,1.690605505112,1.86156681609409,1.04007436911366,0.257207374262142,0,2.39779961114489,1.00084595560703,0,0,1.30294473717494,0.355391948742546,2.37585561880029,1.50719688529793,1.74306691720059,1.89948683245908,0,0,0,0.479249710983165,0,7.13184525203592,9.98991016006297,4.72595541865882,5.72995082367666,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,0,0.813795071099207,0.831883446123229,2.49800584316026,0.473107245101804,1.52283839490527,0.902838299183157,2.27407504055985,1.03473071292505,3.98535359121262,2.94990669666725,2.43274120510632,0.391602314925481,0,0,0,0,0,0,0.30239029332968,2.72918588600655,4.910783145218,4.2099014164961,2.43464383585832,1.53512174720011,5.14732547659544,2.96836132889982,4.00945203886904,3.19611105563629,2.7101961484557,3.63478100428535,1.97557643381931,0,6.6167135200084,0.0920809889358963,1.95184561879831,2.1850940160806,2.09799063935079,0,0.616122696835318,0,0,0.211103257785751,1.13733384070897,0,1.29549549661284,1.54227252690289,0.812839312631559,1.00337954770971,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0.732555718546747,0.577566499444116,2.87132768998086,0.650060246036521,1.6068392984416,0.870036464629098,0,0.614014698904518,0.689182862422653,0.322260734604821,0.725083469571143,1.02271952899321,0.267096106940212,2.31398881505369,2.88285101047659,1.91419068741876,0.30347334256665,0.464845549297286,3.1481234683064,2.0911118104818,3.69640296211307,0.532306030317022,0.869932992075073,1.8532421910392,0.572499546967965,0,0,3.24071329670502,2.04718233049067,0.42793898803392,4.45484547096312,0.78494864019923,1.07923474549989,1.37268514868027,2.94531005864216,1.41527737101321,3.17020642346017,0,0.48763373908959,10.9671070334078,0,0.9554993798559,0.282810863907425,1.13008116620243,5.51365343546124,4.64407282668854,2.19225442626881,1.15755106853338,0.655894752046633,2.43492452355245,3.0982349809975,1.97186921772569,0.573645408816206,0.88424136911809,2.49669736036875,2.48332744849418,0.844430541190656,0.329294892959902,0,0.349934720244983,1.63577591633371,1.34060455107157,1.08890984861323,0.376575203107117,2.15252686335615,3.36942951335251,1.7737206141467,5.74308500517399,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,2.79935628895627,0.449341755736634,1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| ||
|short_description=p6@VEGFC | |short_description=p6@VEGFC | ||
}} | }} |
Latest revision as of 22:37, 16 September 2015
Short description: | p6@VEGFC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VEGFC_5end |
Coexpression cluster: | C2788_Urothelial_Fibroblast_Small_Smooth_Mallassezderived_Myoblast_Gingival |
Association with transcript: | 75bp_to_ENST00000280193_5end |
EntrezGene: | VEGFC |
HGNC: | 12682 |
UniProt: | P49767 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.88e-17 | 76 |
preadipocyte | 5.11e-12 | 12 |
smooth muscle cell | 1.71e-08 | 43 |
smooth muscle myoblast | 1.71e-08 | 43 |
muscle precursor cell | 3.29e-08 | 58 |
myoblast | 3.29e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.29e-08 | 58 |
vascular associated smooth muscle cell | 1.26e-07 | 32 |
skin fibroblast | 3.30e-07 | 23 |
somatic stem cell | 7.06e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 5.02e-11 | 83 |
surface structure | 4.43e-10 | 99 |
epithelial vesicle | 6.80e-09 | 78 |
somite | 2.25e-08 | 71 |
presomitic mesoderm | 2.25e-08 | 71 |
presumptive segmental plate | 2.25e-08 | 71 |
dermomyotome | 2.25e-08 | 71 |
trunk paraxial mesoderm | 2.25e-08 | 71 |
paraxial mesoderm | 4.01e-08 | 72 |
presumptive paraxial mesoderm | 4.01e-08 | 72 |
integument | 6.06e-08 | 46 |
integumental system | 6.06e-08 | 46 |
dense mesenchyme tissue | 7.02e-08 | 73 |
skeletal muscle tissue | 9.11e-08 | 62 |
striated muscle tissue | 9.11e-08 | 62 |
myotome | 9.11e-08 | 62 |
skin of body | 1.02e-07 | 41 |
muscle tissue | 2.93e-07 | 64 |
musculature | 2.93e-07 | 64 |
musculature of body | 2.93e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.04e-11 | 14 |