FFCP PHASE1:Hg19::chr8:145641934..145641949,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55630 | |EntrezGene=55630 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17129 | |HGNC=17129 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P5W5 | |UniProt=Q6P5W5 | ||
|association_with_transcript=-17bp_to_NM_017767,uc003zcp.2_5end | |association_with_transcript=-17bp_to_NM_017767,uc003zcp.2_5end | ||
|cluster_id=chr8:145641934..145641949,- | |||
|coexpression_cluster_id=C2294 | |||
|description=CAGE_peak_9_at_SLC39A4_5end | |description=CAGE_peak_9_at_SLC39A4_5end | ||
|id=chr8:145641934..145641949,- | |id=chr8:145641934..145641949,- | ||
|ontology_enrichment_celltype=CL:0002536!2.99e-09!2 | |ontology_enrichment_celltype=CL:0002536!2.99e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.38e-21;12!CL:0002536;6.42e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.39e-21,12;CL:0002536,8.09e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.92e-35;11!UBERON:0009497;9.23e-30;13!UBERON:0001041;5.91e-13;30!UBERON:0003104;1.63e-12;31 | |||
|ontology_enrichment_disease=DOID:3493!2.33e-09!2;DOID:305!2.76e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:3493;6.42e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,8.74e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.21e-11!155;UBERON:0001555!1.21e-11!155;UBERON:0007026!1.21e-11!155;UBERON:0004921!3.28e-11!129;UBERON:0004185!3.28e-11!129;UBERON:0000160!1.58e-10!27;UBERON:0004119!3.45e-10!169;UBERON:0000925!3.45e-10!169;UBERON:0006595!3.45e-10!169;UBERON:0005409!9.85e-10!35;UBERON:0000059!2.75e-09!11;UBERON:0005177!3.42e-08!107;UBERON:0001155!1.14e-07!9;UBERON:0009569!1.50e-07!113;UBERON:0000466!3.24e-07!126;UBERON:0009856!3.75e-07!26;UBERON:0005172!4.17e-07!55;UBERON:0005173!4.17e-07!55;UBERON:0005911!7.86e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;7.66e-28;4!UBERON:0005409;1.83e-23;22!UBERON:0000160;4.63e-21;17!UBERON:0002107;2.06e-20;19!UBERON:0006925;2.06e-20;19!UBERON:0002423;1.55e-15;25!UBERON:0004921;2.93e-14;33!UBERON:0002365;1.21e-11;31!UBERON:0002330;1.21e-11;31!UBERON:0002368;3.38e-11;33!UBERON:0001155;1.09e-07;9!UBERON:0001007;1.51e-07;81!UBERON:0000949;1.94e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,5.82e-28,4;UBERON:0000160,3.75e-21,17;UBERON:0005409,9.28e-21,25;UBERON:0002107,2.15e-20,19;UBERON:0006925,2.15e-20,19;UBERON:0008836,2.15e-20,19;UBERON:0008835,1.25e-17,22;UBERON:0003894,1.25e-17,22;UBERON:0009854,7.26e-17,23;UBERON:0007499,1.60e-15,25;UBERON:0009497,1.60e-15,25;UBERON:0000015,1.60e-15,25;UBERON:0002423,1.60e-15,25;UBERON:0006235,1.60e-15,25;UBERON:0004161,1.60e-15,25;UBERON:0009856,6.29e-15,26;UBERON:0004921,1.48e-14,118;UBERON:0002365,1.58e-12,31;UBERON:0002330,1.58e-12,31;UBERON:0001007,1.14e-11,145;UBERON:0001555,1.14e-11,145;UBERON:0007026,1.14e-11,145;UBERON:0002368,4.26e-11,35;UBERON:0004119,1.75e-10,160;UBERON:0000925,1.75e-10,160;UBERON:0006595,1.75e-10,160;UBERON:0000949,1.26e-08,45;UBERON:0001155,1.02e-07,9;UBERON:0003929,3.52e-07,54;UBERON:0005172,3.52e-07,54;UBERON:0005173,3.52e-07,54;UBERON:0011216,4.25e-07,223 | |||
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| ||
|short_description=p9@SLC39A4 | |short_description=p9@SLC39A4 | ||
}} | }} |
Latest revision as of 01:55, 17 September 2015
Short description: | p9@SLC39A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SLC39A4_5end |
Coexpression cluster: | C2294_hepatocellular_small_hepatoblastoma_Hepatocyte_colon_adenocarcinoma_Intestinal |
Association with transcript: | -17bp_to_NM_017767, uc003zcp.2_5end |
EntrezGene: | SLC39A4 |
HGNC: | 17129 |
UniProt: | Q6P5W5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.39e-21 | 12 |
amniotic epithelial cell | 8.09e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
small intestine | 5.82e-28 | 4 |
intestine | 3.75e-21 | 17 |
gastrointestinal system | 9.28e-21 | 25 |
liver | 2.15e-20 | 19 |
digestive gland | 2.15e-20 | 19 |
liver bud | 2.15e-20 | 19 |
hepatic diverticulum | 1.25e-17 | 22 |
liver primordium | 1.25e-17 | 22 |
digestive tract diverticulum | 7.26e-17 | 23 |
epithelial sac | 1.60e-15 | 25 |
epithelium of foregut-midgut junction | 1.60e-15 | 25 |
anatomical boundary | 1.60e-15 | 25 |
hepatobiliary system | 1.60e-15 | 25 |
foregut-midgut junction | 1.60e-15 | 25 |
septum transversum | 1.60e-15 | 25 |
sac | 6.29e-15 | 26 |
subdivision of digestive tract | 1.48e-14 | 118 |
exocrine gland | 1.58e-12 | 31 |
exocrine system | 1.58e-12 | 31 |
digestive system | 1.14e-11 | 145 |
digestive tract | 1.14e-11 | 145 |
primitive gut | 1.14e-11 | 145 |
endocrine gland | 4.26e-11 | 35 |
endoderm-derived structure | 1.75e-10 | 160 |
endoderm | 1.75e-10 | 160 |
presumptive endoderm | 1.75e-10 | 160 |
endocrine system | 1.26e-08 | 45 |
colon | 1.02e-07 | 9 |
gut epithelium | 3.52e-07 | 54 |
abdomen element | 3.52e-07 | 54 |
abdominal segment element | 3.52e-07 | 54 |
organ system subdivision | 4.25e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 8.74e-09 | 2 |