FFCP PHASE1:Hg19::chr5:174151648..174151659,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:174151648..174151659,+
|short_description=p3@MSX2
|description=CAGE_peak_3_at_MSX2_5end
|association_with_transcript=43bp_to_ENST00000507785_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4488 | |EntrezGene=4488 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7392 | |HGNC=7392 | ||
|TSSclassifier=strong | |||
|UniProt=D6RIS4 | |UniProt=D6RIS4 | ||
|association_with_transcript=43bp_to_ENST00000507785_5end | |||
|cluster_id=chr5:174151648..174151659,+ | |||
|coexpression_cluster_id=C2819 | |||
|description=CAGE_peak_3_at_MSX2_5end | |||
|id=chr5:174151648..174151659,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;1.65e-09;5!CL:0002537;5.77e-09;5!CL:0000214;1.75e-07;3!CL:0000039;3.54e-07;7!CL:0000586;3.54e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.37e-09,5;CL:0002028,1.37e-09,5;CL:0002537,5.86e-09,5;CL:0000214,1.54e-07,3;CL:0000039,3.27e-07,7;CL:0000586,3.27e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!3.18e-07!143;DOID:299!4.29e-07!25;DOID:305!7.44e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.34e-11;4!DOID:1612;1.34e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.19e-11,4;DOID:1612,1.19e-11,4;DOID:0050687,4.27e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.33e-09!14;UBERON:0000158!9.33e-09!14;UBERON:0003124!5.00e-07!7;UBERON:0004923!5.68e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0001264;5.90e-08;10!UBERON:0005631;1.23e-07;10!UBERON:0000158;1.23e-07;10!UBERON:0006915;1.75e-07;3!UBERON:0007616;1.75e-07;3!UBERON:0002217;1.75e-07;3!UBERON:0002018;1.75e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.80e-11,14;UBERON:0000158,1.80e-11,14;UBERON:0001264,5.44e-08,10;UBERON:0006915,1.54e-07,3;UBERON:0007616,1.54e-07,3;UBERON:0002217,1.54e-07,3;UBERON:0002018,1.54e-07,3 | |||
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| ||
|short_description=p3@MSX2 | |||
}} | }} |
Latest revision as of 03:06, 17 September 2015
Short description: | p3@MSX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MSX2_5end |
Coexpression cluster: | C2819_choriocarcinoma_small_synovial_pancreatic_teratocarcinoma_cholangiocellular_Wilms |
Association with transcript: | 43bp_to_ENST00000507785_5end |
EntrezGene: | MSX2 |
HGNC: | 7392 |
UniProt: | D6RIS4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.37e-09 | 5 |
basophil mast progenitor cell | 1.37e-09 | 5 |
amnion mesenchymal stem cell | 5.86e-09 | 5 |
synovial cell | 1.54e-07 | 3 |
germ line cell | 3.27e-07 | 7 |
germ cell | 3.27e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.80e-11 | 14 |
membranous layer | 1.80e-11 | 14 |
pancreas | 5.44e-08 | 10 |
stratified squamous epithelium | 1.54e-07 | 3 |
layer of synovial tissue | 1.54e-07 | 3 |
synovial joint | 1.54e-07 | 3 |
synovial membrane of synovial joint | 1.54e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.19e-11 | 4 |
breast cancer | 1.19e-11 | 4 |
cell type cancer | 4.27e-08 | 143 |