FFCP PHASE1:Hg19::chr3:18480173..18480189,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6304 | |EntrezGene=6304 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10541 | |HGNC=10541 | ||
|TSSclassifier=strong | |||
|UniProt=C9JLL5 | |UniProt=C9JLL5 | ||
|association_with_transcript=0bp_to_ENST00000414509_5end | |association_with_transcript=0bp_to_ENST00000414509_5end | ||
|cluster_id=chr3:18480173..18480189,- | |||
|coexpression_cluster_id=C712 | |coexpression_cluster_id=C712 | ||
|description=CAGE_peak_6_at_SATB1_5end | |description=CAGE_peak_6_at_SATB1_5end | ||
|id=chr3:18480173..18480189,- | |id=chr3:18480173..18480189,- | ||
|ontology_enrichment_celltype=CL:0000791!1.19e-23!18;CL:0000789!1.19e-23!18;CL:0002420!1.19e-23!18;CL:0002419!1.19e-23!18;CL:0000790!1.19e-23!18;CL:0000084!2.32e-20!25;CL:0000827!2.32e-20!25;CL:0000838!4.36e-19!52;CL:0000542!1.48e-18!53;CL:0000051!1.48e-18!53;CL:0000625!4.31e-16!11;CL:0000738!3.92e-15!140;CL:0002087!5.41e-13!119;CL:0000037!7.67e-12!172;CL:0000566!7.67e-12!172;CL:0000624!6.23e-11!6;CL:0000988!1.93e-10!182;CL:0002031!3.31e-10!124;CL:0002032!4.96e-10!165;CL:0000837!4.96e-10!165 | |ontology_enrichment_celltype=CL:0000791!1.19e-23!18;CL:0000789!1.19e-23!18;CL:0002420!1.19e-23!18;CL:0002419!1.19e-23!18;CL:0000790!1.19e-23!18;CL:0000084!2.32e-20!25;CL:0000827!2.32e-20!25;CL:0000838!4.36e-19!52;CL:0000542!1.48e-18!53;CL:0000051!1.48e-18!53;CL:0000625!4.31e-16!11;CL:0000738!3.92e-15!140;CL:0002087!5.41e-13!119;CL:0000037!7.67e-12!172;CL:0000566!7.67e-12!172;CL:0000624!6.23e-11!6;CL:0000988!1.93e-10!182;CL:0002031!3.31e-10!124;CL:0002032!4.96e-10!165;CL:0000837!4.96e-10!165 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.20e-21;18!CL:0000789;1.20e-21;18!CL:0002419;1.20e-21;18!CL:0000084;3.33e-20;25!CL:0000624;7.97e-16;6!CL:0000625;1.72e-10;11!CL:0000542;4.47e-09;53!CL:0000226;1.19e-08;3!CL:0000842;1.19e-08;3!CL:0000623;1.75e-08;3!CL:0000898;2.12e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.25e-21,18;CL:0000789,1.25e-21,18;CL:0002420,1.25e-21,18;CL:0002419,1.25e-21,18;CL:0000790,1.25e-21,18;CL:0000084,3.28e-20,25;CL:0000827,3.28e-20,25;CL:0000838,1.81e-16,52;CL:0000542,4.75e-16,53;CL:0000051,4.75e-16,53;CL:0000624,7.82e-16,6;CL:0002087,8.18e-12,115;CL:0000625,1.79e-10,11;CL:0000738,1.85e-10,136;CL:0000226,1.38e-08,3;CL:0000842,1.38e-08,3;CL:0000623,1.65e-08,3;CL:0000825,1.65e-08,3;CL:0000037,2.14e-08,168;CL:0000898,2.30e-08,3;CL:0002031,2.84e-08,120;CL:0000988,1.42e-07,177;CL:0002032,6.38e-07,161;CL:0000837,6.38e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.20e-21;18!CL:0000051;4.47e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!2.20e-20!20;UBERON:0002619!3.84e-18!22;UBERON:0000956!1.94e-15!25;UBERON:0000203!1.94e-15!25;UBERON:0001869!3.63e-14!32;UBERON:0002020!3.66e-14!34;UBERON:0003528!3.66e-14!34;UBERON:0001893!4.97e-13!34;UBERON:0002791!4.86e-12!33;UBERON:0007023!4.73e-10!115;UBERON:0002780!6.12e-10!41;UBERON:0001890!6.12e-10!41;UBERON:0006240!6.12e-10!41;UBERON:0003080!1.39e-09!42;UBERON:0001049!8.90e-09!57;UBERON:0005068!8.90e-09!57;UBERON:0006241!8.90e-09!57;UBERON:0007135!8.90e-09!57;UBERON:0002616!2.77e-08!59;UBERON:0001872!4.01e-08!5;UBERON:0002021!5.65e-08!5;UBERON:0000955!1.10e-07!69;UBERON:0006238!1.10e-07!69;UBERON:0000178!4.92e-07!15;UBERON:0000179!4.92e-07!15;UBERON:0000463!4.92e-07!15;UBERON:0000200!7.79e-07!6;UBERON:0001017!8.38e-07!82 | |ontology_enrichment_uberon=UBERON:0001950!2.20e-20!20;UBERON:0002619!3.84e-18!22;UBERON:0000956!1.94e-15!25;UBERON:0000203!1.94e-15!25;UBERON:0001869!3.63e-14!32;UBERON:0002020!3.66e-14!34;UBERON:0003528!3.66e-14!34;UBERON:0001893!4.97e-13!34;UBERON:0002791!4.86e-12!33;UBERON:0007023!4.73e-10!115;UBERON:0002780!6.12e-10!41;UBERON:0001890!6.12e-10!41;UBERON:0006240!6.12e-10!41;UBERON:0003080!1.39e-09!42;UBERON:0001049!8.90e-09!57;UBERON:0005068!8.90e-09!57;UBERON:0006241!8.90e-09!57;UBERON:0007135!8.90e-09!57;UBERON:0002616!2.77e-08!59;UBERON:0001872!4.01e-08!5;UBERON:0002021!5.65e-08!5;UBERON:0000955!1.10e-07!69;UBERON:0006238!1.10e-07!69;UBERON:0000178!4.92e-07!15;UBERON:0000179!4.92e-07!15;UBERON:0000463!4.92e-07!15;UBERON:0000200!7.79e-07!6;UBERON:0001017!8.38e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.27e-16;20!UBERON:0002619;6.57e-15;22!UBERON:0000956;7.74e-13;25!UBERON:0000203;7.74e-13;25!UBERON:0001869;4.31e-11;32!UBERON:0001893;6.88e-11;34!UBERON:0000200;6.36e-10;6!UBERON:0002791;1.06e-09;32!UBERON:0003528;9.90e-09;34!UBERON:0002020;9.90e-09;34!UBERON:0002021;8.11e-08;5!UBERON:0002370;4.88e-07;2!UBERON:0005058;4.88e-07;2!UBERON:0009113;4.88e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,9.82e-17,20;UBERON:0002619,5.21e-15,22;UBERON:0000956,6.32e-13,25;UBERON:0000203,6.32e-13,25;UBERON:0001869,6.40e-13,32;UBERON:0001893,5.62e-12,34;UBERON:0002791,3.72e-11,32;UBERON:0003528,2.46e-10,34;UBERON:0002020,2.46e-10,34;UBERON:0000200,8.02e-10,6;UBERON:0002780,2.13e-09,41;UBERON:0001890,2.13e-09,41;UBERON:0003080,2.13e-09,41;UBERON:0006240,2.13e-09,41;UBERON:0002021,8.44e-08,5 | |||
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|short_description=p6@SATB1 | |short_description=p6@SATB1 | ||
}} | }} |
Latest revision as of 03:12, 17 September 2015
Short description: | p6@SATB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SATB1_5end |
Coexpression cluster: | C712_thymus_biphenotypic_CD4_non_granulocyte_merkel_acute |
Association with transcript: | 0bp_to_ENST00000414509_5end |
EntrezGene: | SATB1 |
HGNC: | 10541 |
UniProt: | C9JLL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.25e-21 | 18 |
alpha-beta T cell | 1.25e-21 | 18 |
immature T cell | 1.25e-21 | 18 |
mature T cell | 1.25e-21 | 18 |
immature alpha-beta T cell | 1.25e-21 | 18 |
T cell | 3.28e-20 | 25 |
pro-T cell | 3.28e-20 | 25 |
lymphoid lineage restricted progenitor cell | 1.81e-16 | 52 |
lymphocyte | 4.75e-16 | 53 |
common lymphoid progenitor | 4.75e-16 | 53 |
CD4-positive, alpha-beta T cell | 7.82e-16 | 6 |
nongranular leukocyte | 8.18e-12 | 115 |
CD8-positive, alpha-beta T cell | 1.79e-10 | 11 |
leukocyte | 1.85e-10 | 136 |
single nucleate cell | 1.38e-08 | 3 |
mononuclear cell | 1.38e-08 | 3 |
natural killer cell | 1.65e-08 | 3 |
pro-NK cell | 1.65e-08 | 3 |
hematopoietic stem cell | 2.14e-08 | 168 |
naive T cell | 2.30e-08 | 3 |
hematopoietic lineage restricted progenitor cell | 2.84e-08 | 120 |
hematopoietic cell | 1.42e-07 | 177 |
hematopoietic oligopotent progenitor cell | 6.38e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.38e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
neocortex | 9.82e-17 | 20 |
regional part of cerebral cortex | 5.21e-15 | 22 |
cerebral cortex | 6.32e-13 | 25 |
pallium | 6.32e-13 | 25 |
cerebral hemisphere | 6.40e-13 | 32 |
telencephalon | 5.62e-12 | 34 |
regional part of telencephalon | 3.72e-11 | 32 |
brain grey matter | 2.46e-10 | 34 |
gray matter | 2.46e-10 | 34 |
gyrus | 8.02e-10 | 6 |
regional part of forebrain | 2.13e-09 | 41 |
forebrain | 2.13e-09 | 41 |
anterior neural tube | 2.13e-09 | 41 |
future forebrain | 2.13e-09 | 41 |
occipital lobe | 8.44e-08 | 5 |