FFCP PHASE1:Hg19::chr10:17270808..17270866,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7431 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-1bp_to_ENST00000497849_5end | |||
|cluster_id=chr10:17270808..17270866,+ | |||
|description=CAGE_peak_6_at_VIM_5end | |||
|id=chr10:17270808..17270866,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.88e-24!180;CL:0002371!1.14e-20!591;CL:0000144!8.25e-20!625;CL:0002057!4.04e-16!42;CL:0000048!2.50e-15!430;CL:0000860!2.43e-14!45;CL:0000034!4.66e-14!444;CL:0000723!5.03e-14!436;CL:0000057!2.71e-12!75;CL:0000012!3.72e-12!682;CL:0000548!5.79e-12!679;CL:0000004!5.79e-12!679;CL:0000255!5.79e-12!679;CL:0000219!2.70e-11!390;CL:0000557!7.11e-10!71;CL:0000766!1.10e-09!76;CL:0002320!1.13e-09!365;CL:0000134!1.37e-08!358;CL:0002009!2.36e-08!65;CL:0000839!3.36e-08!70;CL:0000133!4.56e-08!59;CL:0002194!5.82e-08!63;CL:0000576!5.82e-08!63;CL:0000040!5.82e-08!63;CL:0000559!5.82e-08!63;CL:0000003!1.30e-07!722;CL:0002620!1.64e-07!23;CL:0000222!2.00e-07!119;CL:0000183!5.82e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.52e-17;33!CL:0002057;3.52e-17;33!CL:0000473;1.78e-11;39!CL:0000234;1.78e-11;39!CL:0000576;3.83e-08;48!CL:0002620;5.01e-08;23!CL:0000766;1.16e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,4.82e-17,427;CL:0000860,1.78e-16,42;CL:0002057,1.78e-16,42;CL:0000723,4.02e-16,433;CL:0000034,5.18e-16,441;CL:0000219,6.67e-15,386;CL:0000473,7.82e-14,48;CL:0000234,7.82e-14,48;CL:0002320,3.49e-13,361;CL:0000057,3.65e-13,76;CL:0000766,1.39e-12,72;CL:0000557,2.04e-12,67;CL:0000134,6.01e-12,354;CL:0002009,9.99e-11,61;CL:0000839,1.04e-10,66;CL:0002194,3.07e-10,59;CL:0000576,3.07e-10,59;CL:0000040,3.07e-10,59;CL:0000559,3.07e-10,59;CL:0002620,2.45e-08,23;CL:0000133,3.54e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.30e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.65e-15!167;UBERON:0003081!3.15e-13!216;UBERON:0004765!5.20e-11!101;UBERON:0001434!5.20e-11!101;UBERON:0002384!1.82e-10!375;UBERON:0001474!4.44e-10!86;UBERON:0002371!5.28e-10!80;UBERON:0002049!2.50e-09!79;UBERON:0007798!2.50e-09!79;UBERON:0001981!8.06e-09!60;UBERON:0007500!8.06e-09!60;UBERON:0004537!8.06e-09!60;UBERON:0006965!8.06e-09!60;UBERON:0001637!2.78e-08!42;UBERON:0003509!2.78e-08!42;UBERON:0004572!2.78e-08!42;UBERON:0000055!3.35e-08!69;UBERON:0000914!1.65e-07!83;UBERON:0002329!1.65e-07!83;UBERON:0003077!1.65e-07!83;UBERON:0003059!1.65e-07!83;UBERON:0007282!1.65e-07!83;UBERON:0009618!1.65e-07!83;UBERON:0007285!1.65e-07!83;UBERON:0004535!2.12e-07!110;UBERON:0004573!2.76e-07!33;UBERON:0004571!2.76e-07!33;UBERON:0004872!3.24e-07!84;UBERON:0001009!9.30e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.04e-15,167;UBERON:0002384,3.06e-14,371;UBERON:0001434,4.28e-13,100;UBERON:0002371,3.08e-12,76;UBERON:0003081,5.09e-12,203;UBERON:0004765,5.70e-12,90;UBERON:0001474,1.16e-11,82;UBERON:0000926,2.64e-10,315;UBERON:0004120,2.64e-10,315;UBERON:0006603,2.64e-10,315;UBERON:0001637,1.67e-08,42;UBERON:0003509,1.67e-08,42;UBERON:0004572,1.67e-08,42;UBERON:0007500,1.13e-07,59;UBERON:0001981,1.13e-07,59;UBERON:0004537,1.13e-07,59;UBERON:0006965,1.13e-07,59;UBERON:0002405,1.18e-07,93;UBERON:0004573,2.12e-07,33;UBERON:0004571,2.12e-07,33;UBERON:0002097,4.90e-07,41;UBERON:0002199,5.78e-07,46;UBERON:0002416,5.78e-07,46;UBERON:0002049,5.88e-07,78;UBERON:0007798,5.88e-07,78;UBERON:0002390,7.27e-07,98;UBERON:0003061,7.27e-07,98 | |||
|phase1_expression=0.726713517082227,0.642301571672949,0.845726424575827,2.00146596706261,0,0.872338524100369,0,1.89515962028049,0.522371256399677,0.737201809504527,0,0.218441372130172,1.05506791291381,2.22779435328084,3.97676850873499,2.01697543935533,1.80808358407193,2.19093027116212,1.46379839637152,4.92484232307152,4.08001382488506,3.13454721478088,7.15589967827642,4.79060487755095,5.90050406095573,0.152826811495903,0.164201178899891,0.236132343941038,8.65401409067589,5.37361157336098,9.75341576891279,0,0,0,0,0.142169232487422,0.293600439334847,7.75593571944628,14.2386557703801,10.6335326650767,0,0,0,3.48955773070955,3.02300754951048,3.63876091781724,6.74044207026485,4.52284676824008,4.02618282163635,9.20615655430881,7.42866048934392,4.49316236788312,15.1688099524112,6.45484683583826,4.06279459783025,4.1413314699373,3.547779950752,1.79778787556068,13.1616073719488,8.98601275813062,8.95071976118658,2.63881040149373,4.9865914405408,4.68847225585964,15.6712988859435,6.80862269629368,12.4564449799115,7.78870862295904,7.82224377630302,4.99534342821768,9.08099253950053,10.6800514436394,5.37986058649504,0.422510572623884,1.06302149982522,0.209658645508376,0.673971786878971,1.80212271409808,0.64290234678832,0.855038231223746,0.79566670879636,0.547992461293902,0,0,0,0,0,0,0.661044872784862,0,0,0.587237189370939,0.764546456250458,2.64342657158052,0,1.31692042387539,0.786839080455332,1.17903228824749,0.822405995998037,0.167186495390678,0.977766799900771,0.473447805734733,0,0.111410456885174,0,0.221533894583621,0,0.128091319725675,0.390178042679635,0.328875809207352,0,0,0.14828656316206,0.535081656179426,0,0.113309342697566,0.766440987203842,0,0.759059076058509,0,0,0,0.150575119077773,0,0,0,0,2.62088766192152,6.41856469880418,1.44824403882799,2.43806866313962,1.34140171940727,0.639312809217652,1.44575660953827,1.00267582127178,1.30361867064741,0,0.486634870302636,3.97046232089085,4.21285855178871,3.42555664203192,0.130979075497713,0.728590576585084,0,0,0.348259474598534,0.132957960518865,1.66943437013739,0.571994910780128,0,1.39133685156694,4.30117297553062,1.38856200643038,0.56530794192401,1.25849830862972,1.6507082516404,2.50793959844173,0.775250277507987,0.71153252537342,1.33888245105868,5.23678112241891,0.760272105718513,1.22031028774085,1.10298924103761,2.43042584364528,0.625098097988558,1.57170560838319,1.12611480483322,1.53316637465883,2.84779697870439,0.916008719652036,1.31780417436063,0,0,0.993943903390637,1.64619665163954,2.25095607382472,4.01571269048339,2.12801029319014,1.12135520028461,2.1349799145941,1.72667283892012,0.933633106199299,0.404132016209064,0.490385709340376,1.51357427644931,0,4.68642863667593,2.18512053781224,1.1409436430889,2.54062756938062,1.87895197830024,1.78060238804945,0.702254033511242,1.63323337003915,3.19369225010597,3.40975077880026,1.18800285728205,1.48360157567134,3.64064544775211,0.718618141816238,2.52504170931099,2.75260743718321,2.77064115484183,3.95079858792754,2.45190236639216,1.95309476578576,0.340296549480063,11.3015470483983,1.2813443329114,1.27159140695737,6.60200411385685,2.37020817248409,6.95629458123199,1.8611685633159,18.9029492110218,4.18979122193154,6.31084435610286,1.84099797284599,1.45481451136931,15.620422070731,1.61203357164224,2.20428770003634,0.57978255948989,0,0,0.487894824518382,0.397589304964456,0.348581828608555,1.0366105501537,1.51392510525377,0,6.25798129319264,2.57296375277154,6.90674606762403,4.17931135228781,1.44375896333917,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0,0,0,0.38474715694639,0.738155454624648,2.80483547606892,0.4115740113314,0,0,0,0,0,0,2.23038153388083,0.109750285408626,1.1240175325762,0,0,4.88712457965487,3.11980435583874,1.44331342025273,10.7815276626821,2.58299127318808,0.866198686566443,0.462985512576611,0.380508304469197,0,0,0.246217006087397,0.234004265139238,0,0,0.839910640994298,0.141775097242386,0.716468181622786,0.581267877027924,0.383382679165211,2.46331618947972,0.528290604079356,7.25648404392702,4.03535869567492,4.4184851699233,1.20645999155121,1.90994212779139,1.17217447210047,3.4214489204541,1.33675740514321,1.50171528921959,2.00078502841405,3.1396703616701,1.74384027533312,1.83345714552375,1.93907573636667,10.7296933755565,1.690605505112,1.59562869950922,1.04007436911366,0.514414748524284,5.67396528093113,1.0656887160644,1.14382394926518,0,0.823240336780769,1.62868092146868,0.355391948742546,1.58390374586686,0.602878754119172,0.871533458600294,1.3996218765488,1.2162378064119,0,2.10833939483032,1.19812427745791,1.14861935834114,9.98458335285029,0.144781306667579,0.61642896765115,0.895304816199478,0,2.75843064282698,3.01878604803324,3.85029108839245,5.84417635711666,1.30139853857622,1.54657762555539,2.84777651068393,3.82763250991898,1.49801404789436,0,1.24324654030811,2.33113834266366,5.50187573165645,1.08506009479894,2.49565033836969,2.49800584316026,2.05013139544115,2.22568688486155,2.40756879782175,2.27407504055985,6.2083842775503,1.32845119707087,2.02806085395873,3.12781012085098,0.783204629850962,2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| |||
|short_description=p6@VIM | |||
}} |
Latest revision as of 10:23, 17 September 2015
Short description: | p6@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VIM_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000497849_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 4.82e-17 | 427 |
classical monocyte | 1.78e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.78e-16 | 42 |
somatic stem cell | 4.02e-16 | 433 |
stem cell | 5.18e-16 | 441 |
motile cell | 6.67e-15 | 386 |
defensive cell | 7.82e-14 | 48 |
phagocyte | 7.82e-14 | 48 |
connective tissue cell | 3.49e-13 | 361 |
fibroblast | 3.65e-13 | 76 |
myeloid leukocyte | 1.39e-12 | 72 |
granulocyte monocyte progenitor cell | 2.04e-12 | 67 |
mesenchymal cell | 6.01e-12 | 354 |
macrophage dendritic cell progenitor | 9.99e-11 | 61 |
myeloid lineage restricted progenitor cell | 1.04e-10 | 66 |
monopoietic cell | 3.07e-10 | 59 |
monocyte | 3.07e-10 | 59 |
monoblast | 3.07e-10 | 59 |
promonocyte | 3.07e-10 | 59 |
skin fibroblast | 2.45e-08 | 23 |
neurectodermal cell | 3.54e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.04e-15 | 167 |
connective tissue | 3.06e-14 | 371 |
skeletal system | 4.28e-13 | 100 |
bone marrow | 3.08e-12 | 76 |
lateral plate mesoderm | 5.09e-12 | 203 |
skeletal element | 5.70e-12 | 90 |
bone element | 1.16e-11 | 82 |
mesoderm | 2.64e-10 | 315 |
mesoderm-derived structure | 2.64e-10 | 315 |
presumptive mesoderm | 2.64e-10 | 315 |
artery | 1.67e-08 | 42 |
arterial blood vessel | 1.67e-08 | 42 |
arterial system | 1.67e-08 | 42 |
epithelial tube open at both ends | 1.13e-07 | 59 |
blood vessel | 1.13e-07 | 59 |
blood vasculature | 1.13e-07 | 59 |
vascular cord | 1.13e-07 | 59 |
immune system | 1.18e-07 | 93 |
systemic artery | 2.12e-07 | 33 |
systemic arterial system | 2.12e-07 | 33 |
skin of body | 4.90e-07 | 41 |
integument | 5.78e-07 | 46 |
integumental system | 5.78e-07 | 46 |
vasculature | 5.88e-07 | 78 |
vascular system | 5.88e-07 | 78 |
hematopoietic system | 7.27e-07 | 98 |
blood island | 7.27e-07 | 98 |