FFCP PHASE1:Hg19::chr13:47127266..47127279,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23143 | |EntrezGene=23143 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20309 | |HGNC=20309 | ||
|TSSclassifier=strong | |||
|UniProt=B7ZLL5,Q17R43,Q9Y2L9 | |UniProt=B7ZLL5,Q17R43,Q9Y2L9 | ||
|association_with_transcript=-16bp_to_NM_001164211,NM_001164213,NM_015116,uc001vbj.2,uc001vbk.2,uc001vbl.3,uc010acp.2_5end | |association_with_transcript=-16bp_to_NM_001164211,NM_001164213,NM_015116,uc001vbj.2,uc001vbk.2,uc001vbl.3,uc010acp.2_5end | ||
|cluster_id=chr13:47127266..47127279,+ | |||
|description=CAGE_peak_4_at_LRCH1_5end | |description=CAGE_peak_4_at_LRCH1_5end | ||
|id=chr13:47127266..47127279,+ | |id=chr13:47127266..47127279,+ | ||
|ontology_enrichment_celltype=CL:0000557!4.06e-14!71;CL:0002031!1.57e-13!124;CL:0000738!3.23e-13!140;CL:0000037!8.70e-13!172;CL:0000566!8.70e-13!172;CL:0002032!1.34e-12!165;CL:0000837!1.34e-12!165;CL:0002009!1.81e-12!65;CL:0002087!3.14e-12!119;CL:0000988!6.91e-12!182;CL:0000839!8.57e-12!70;CL:0002194!1.82e-11!63;CL:0000576!1.82e-11!63;CL:0000040!1.82e-11!63;CL:0000559!1.82e-11!63;CL:0000766!4.58e-11!76;CL:0000763!5.67e-11!112;CL:0000049!5.67e-11!112;CL:0002057!1.85e-09!42;CL:0000860!2.92e-09!45 | |ontology_enrichment_celltype=CL:0000557!4.06e-14!71;CL:0002031!1.57e-13!124;CL:0000738!3.23e-13!140;CL:0000037!8.70e-13!172;CL:0000566!8.70e-13!172;CL:0002032!1.34e-12!165;CL:0000837!1.34e-12!165;CL:0002009!1.81e-12!65;CL:0002087!3.14e-12!119;CL:0000988!6.91e-12!182;CL:0000839!8.57e-12!70;CL:0002194!1.82e-11!63;CL:0000576!1.82e-11!63;CL:0000040!1.82e-11!63;CL:0000559!1.82e-11!63;CL:0000766!4.58e-11!76;CL:0000763!5.67e-11!112;CL:0000049!5.67e-11!112;CL:0002057!1.85e-09!42;CL:0000860!2.92e-09!45 | ||
|ontology_enrichment_celltype_v019=CL:0000473;4.61e-11;39!CL:0000234;4.61e-11;39!CL:0000860;1.21e-09;33!CL:0002057;1.21e-09;33 | |ontology_enrichment_celltype_v019=CL:0000473;4.61e-11;39!CL:0000234;4.61e-11;39!CL:0000860;1.21e-09;33!CL:0002057;1.21e-09;33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000557,2.83e-15,67;CL:0000738,4.93e-15,136;CL:0002031,6.08e-15,120;CL:0000037,8.19e-15,168;CL:0002032,2.66e-14,161;CL:0000837,2.66e-14,161;CL:0000988,4.59e-14,177;CL:0002009,1.56e-13,61;CL:0002087,2.09e-13,115;CL:0000473,2.60e-13,48;CL:0000234,2.60e-13,48;CL:0000839,2.24e-12,66;CL:0002194,3.44e-12,59;CL:0000576,3.44e-12,59;CL:0000040,3.44e-12,59;CL:0000559,3.44e-12,59;CL:0000763,3.92e-12,108;CL:0000049,3.92e-12,108;CL:0000766,7.70e-12,72;CL:0000860,8.40e-11,42;CL:0002057,8.40e-11,42;CL:0000945,2.58e-07,24;CL:0000826,2.58e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;6.05e-08;42 | |ontology_enrichment_development_v019=CL:0002057;6.05e-08;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.46e-11!80;UBERON:0002390!1.43e-10!102;UBERON:0003061!1.43e-10!102;UBERON:0001474!1.60e-10!86;UBERON:0002193!1.80e-10!112;UBERON:0004765!5.42e-09!101;UBERON:0001434!5.42e-09!101;UBERON:0002405!7.04e-09!115;UBERON:0007023!5.60e-07!115 | |ontology_enrichment_uberon=UBERON:0002371!1.46e-11!80;UBERON:0002390!1.43e-10!102;UBERON:0003061!1.43e-10!102;UBERON:0001474!1.60e-10!86;UBERON:0002193!1.80e-10!112;UBERON:0004765!5.42e-09!101;UBERON:0001434!5.42e-09!101;UBERON:0002405!7.04e-09!115;UBERON:0007023!5.60e-07!115 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,8.40e-15,93;UBERON:0002371,4.08e-13,76;UBERON:0001474,2.08e-12,82;UBERON:0002193,2.34e-12,108;UBERON:0002390,3.48e-12,98;UBERON:0003061,3.48e-12,98;UBERON:0004765,6.35e-10,90;UBERON:0001434,1.35e-09,100 | |||
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| ||
|short_description=p4@LRCH1 | |short_description=p4@LRCH1 | ||
}} | }} |
Latest revision as of 14:09, 17 September 2015
Short description: | p4@LRCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_NM_001164211, NM_001164213, NM_015116, uc001vbj.2, uc001vbk.2, uc001vbl.3, uc010acp.2_5end |
EntrezGene: | LRCH1 |
HGNC: | 20309 |
UniProt: | B7ZLL5Q17R43Q9Y2L9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 2.83e-15 | 67 |
leukocyte | 4.93e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 6.08e-15 | 120 |
hematopoietic stem cell | 8.19e-15 | 168 |
hematopoietic oligopotent progenitor cell | 2.66e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.66e-14 | 161 |
hematopoietic cell | 4.59e-14 | 177 |
macrophage dendritic cell progenitor | 1.56e-13 | 61 |
nongranular leukocyte | 2.09e-13 | 115 |
defensive cell | 2.60e-13 | 48 |
phagocyte | 2.60e-13 | 48 |
myeloid lineage restricted progenitor cell | 2.24e-12 | 66 |
monopoietic cell | 3.44e-12 | 59 |
monocyte | 3.44e-12 | 59 |
monoblast | 3.44e-12 | 59 |
promonocyte | 3.44e-12 | 59 |
myeloid cell | 3.92e-12 | 108 |
common myeloid progenitor | 3.92e-12 | 108 |
myeloid leukocyte | 7.70e-12 | 72 |
classical monocyte | 8.40e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.40e-11 | 42 |
lymphocyte of B lineage | 2.58e-07 | 24 |
pro-B cell | 2.58e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
immune system | 8.40e-15 | 93 |
bone marrow | 4.08e-13 | 76 |
bone element | 2.08e-12 | 82 |
hemolymphoid system | 2.34e-12 | 108 |
hematopoietic system | 3.48e-12 | 98 |
blood island | 3.48e-12 | 98 |
skeletal element | 6.35e-10 | 90 |
skeletal system | 1.35e-09 | 100 |