FFCP PHASE1:Hg19::chr1:156106077..156106091,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000459904_5end | |association_with_transcript=0bp_to_ENST00000459904_5end | ||
|cluster_id=chr1:156106077..156106091,+ | |||
|description=CAGE_peak_11_at_LMNA_5end | |description=CAGE_peak_11_at_LMNA_5end | ||
|id=chr1:156106077..156106091,+ | |id=chr1:156106077..156106091,+ | ||
|ontology_enrichment_celltype=CL:0000548!4.68e-16!679;CL:0000004!4.68e-16!679;CL:0000255!4.68e-16!679;CL:0000012!7.25e-16!682;CL:0000144!1.01e-14!625;CL:0002371!3.85e-14!591;CL:0000055!7.20e-12!180;CL:0000063!9.98e-11!578;CL:0000057!1.01e-10!75;CL:0000003!6.66e-09!722;CL:0002057!1.10e-07!42;CL:0000860!2.51e-07!45 | |ontology_enrichment_celltype=CL:0000548!4.68e-16!679;CL:0000004!4.68e-16!679;CL:0000255!4.68e-16!679;CL:0000012!7.25e-16!682;CL:0000144!1.01e-14!625;CL:0002371!3.85e-14!591;CL:0000055!7.20e-12!180;CL:0000063!9.98e-11!578;CL:0000057!1.01e-10!75;CL:0000003!6.66e-09!722;CL:0002057!1.10e-07!42;CL:0000860!2.51e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.80e-19;33!CL:0002057;1.80e-19;33!CL:0000473;4.07e-12;39!CL:0000234;4.07e-12;39!CL:0000576;2.25e-08;48 | |ontology_enrichment_celltype_v019=CL:0000860;1.80e-19;33!CL:0002057;1.80e-19;33!CL:0000473;4.07e-12;39!CL:0000234;4.07e-12;39!CL:0000576;2.25e-08;48 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.95e-15,42;CL:0002057,2.95e-15,42;CL:0000473,1.61e-12,48;CL:0000234,1.61e-12,48;CL:0000557,2.14e-12,67;CL:0002009,1.64e-10,61;CL:0000839,2.69e-10,66;CL:0000766,7.04e-09,72;CL:0002194,9.12e-09,59;CL:0000576,9.12e-09,59;CL:0000040,9.12e-09,59;CL:0000559,9.12e-09,59;CL:0000134,1.43e-08,354;CL:0000219,2.14e-08,386;CL:0002320,4.67e-08,361;CL:0000723,1.13e-07,433;CL:0000048,1.17e-07,427;CL:0000034,3.56e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.81e-11;42 | |ontology_enrichment_development_v019=CL:0002057;2.81e-11;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!3.54e-10!95;UBERON:0002204!1.94e-09!167;UBERON:0002097!5.21e-07!40;UBERON:0002199!5.27e-07!45;UBERON:0002416!5.27e-07!45;UBERON:0000926!7.49e-07!448;UBERON:0004120!7.49e-07!448;UBERON:0006603!7.49e-07!448 | |ontology_enrichment_uberon=UBERON:0003102!3.54e-10!95;UBERON:0002204!1.94e-09!167;UBERON:0002097!5.21e-07!40;UBERON:0002199!5.27e-07!45;UBERON:0002416!5.27e-07!45;UBERON:0000926!7.49e-07!448;UBERON:0004120!7.49e-07!448;UBERON:0006603!7.49e-07!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.93e-10,76;UBERON:0001474,1.02e-09,82;UBERON:0001434,1.19e-09,100;UBERON:0004765,5.06e-09,90;UBERON:0002204,2.44e-08,167;UBERON:0002384,2.30e-07,371;UBERON:0002405,6.49e-07,93 | |||
|phase1_expression=1.45342703416445,1.49870366723688,1.26858963686374,0,0.446961094427288,0.872338524100369,0,0.631719873426831,0,0.245733936501509,0,0,0.527533956456907,0.74259811776028,0.662794751455832,2.6893005858071,0.602694528023977,0,0.975865597581014,0,0,0.626909442956176,0,1.50561867580173,0.125542639594803,0.0764134057479513,0.0821005894499457,0,0,0.767658796194425,0.464448369948228,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0.293600439334847,0,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0,1.45398238779565,1.88937971844405,1.21292030593908,0.697287110717054,1.23350366406548,2.47765096716083,0.863077176966451,1.5369642391746,2.12834006899727,0.689491361473237,1.29096936716765,0,2.82363509313907,1.36453075028923,2.02251136000576,1.83650335422542,1.92557416245656,1.91801137739712,0.659702600373432,1.19678194572979,0.426224750532694,1.7412554317715,0.56738522469114,2.4912889959823,1.50749199154046,2.08593167368081,1.3031330682307,1.21079900526674,1.10483290796269,2.21523671208619,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,1.57204305099666,0.205601498999509,0.167186495390678,0,0,0,0.222820913770347,0.883817722424512,0.664601683750863,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0.604820229674197,1.06976078313403,0,2.43806866313962,0,0.255725123687061,0.361439152384566,0,1.01392563272577,0,0,0.472674085820339,0.221729397462564,0.263504357079378,0.196468613246569,1.82147644146271,1.11235332835329,0,0,0.398873881556595,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0.838998872419812,0.825354125820202,0.417989933073621,0.258416759169329,0,0,0,0,0,0,1.62028389576352,0.625098097988558,0,0,0,0.949265659568129,1.09921046358244,0,0,0.436094052142534,0.993943903390637,0.759783069987479,0.264818361626438,1.43418310374407,2.83734705758686,0.560677600142307,0,1.48000529050296,0,0.134710672069688,0.163461903113459,0,0,0.468642863667593,0.312160076830321,0.570471821544449,2.24173020827702,0.822041490506354,0.647491777472526,0.842704840213491,0.61246251376468,1.47401180774122,1.34323515528495,1.18800285728205,2.22540236350701,0,0.718618141816238,0.841680569770331,0.750711119231785,0,0.877955241761676,3.37136575378922,0.45071417671979,0.340296549480063,0.358779271377724,0.85422955527427,0.847727604638247,0.600182192168805,0.206105058476878,0.515281080091258,1.67505170698431,0.843881661206331,0.389748020644795,0.757301322732344,0.552299391853796,0.323292113637624,0.355009592516614,0.503760491138201,1.18692414617341,0.193260853163297,0.272746120590835,0,0,0,0.116193942869518,0.207322110030741,0.504641701751257,0,0,2.57296375277154,2.76269842704961,1.39310378409594,0.721879481669586,0.354920400119532,0.842923450390509,0.964044119533928,0.330881918197182,0.653638332277218,0.237270619111097,0.404493924480493,0.588664395376038,0.38474715694639,0,0,0,1.47008711385542,0,0,0,0,0.368965315629341,0,0.548751427043128,1.1240175325762,0.301586917234893,0.648119116109707,0.651616610620649,1.03993478527958,1.44331342025273,0.231860809950154,0,0.577465791044295,0,0.190254152234598,0,0.858486162094873,0,0,0.148631162288728,1.87467667973554,0,0.283550194484773,0,0,0.383382679165211,0.492663237895943,0.352193736052904,6.84182781284548,2.45003920808834,3.40854570251226,0,0.381988425558278,1.17217447210047,3.4214489204541,1.02827492703324,1.20137223137567,0.285826432630578,0.112131084345361,0,0.2933531432838,0.258543431515556,0,0,1.59562869950922,0,0.514414748524284,0,0.799266537048298,0.428933980974443,0.542621605391443,0,0.977208552881205,0,0,0.904318131178758,0.871533458600294,0.399891964728228,0,0.502257091432126,0,0.479249710983165,0,0,0.723906533337896,1.02738161275192,0.358121926479791,0,0,0.215627574859517,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.858840442033979,0,0.542530047399471,0.415941723061614,1.96271887676878,0.630809660135739,0,0.902838299183157,9.09630016223939,3.10419213877515,1.32845119707087,0.921845842708516,0.781952530212746,0.195801157462741,0.686286847621712,0,0,0,1.81876542867756,0,1.5119514666484,2.97729369382532,1.07423381301644,1.12264037773229,1.28139149255701,0.511707249066704,0.482561763430822,0,0.925258162815933,1.59805552781814,0.328508624055237,1.03850885836724,0.464841513839837,0.120859449591622,1.20303882181971,0.368323955743585,1.14814448164607,0.546273504020151,1.57349297951309,0.451199612907412,0.0770153371044148,0,1.46139224653261,0,1.13733384070897,0.850468526382578,1.0795795805107,0,0.541892875087706,0.501689773854853,0.254876273045038,1.66215201785745,0.223874754722178,0.219259876645935,0.261435451024901,0,1.31205858279882,0.325378394664303,0.103041011647722,0.366277859273374,0.082509499920588,0.574265537996172,0.650060246036521,0,0.676695028044854,0.616194468458578,0.767518373630648,0.689182862422653,0.429680979473094,0.725083469571143,0.681813019328807,0.267096106940212,0.330569830721956,0.384380134730212,0.255225424989168,0.3034733425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|short_description=p11@LMNA | |short_description=p11@LMNA | ||
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Latest revision as of 15:06, 17 September 2015
Short description: | p11@LMNA |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LMNA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000459904_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.95e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.95e-15 | 42 |
defensive cell | 1.61e-12 | 48 |
phagocyte | 1.61e-12 | 48 |
granulocyte monocyte progenitor cell | 2.14e-12 | 67 |
macrophage dendritic cell progenitor | 1.64e-10 | 61 |
myeloid lineage restricted progenitor cell | 2.69e-10 | 66 |
myeloid leukocyte | 7.04e-09 | 72 |
monopoietic cell | 9.12e-09 | 59 |
monocyte | 9.12e-09 | 59 |
monoblast | 9.12e-09 | 59 |
promonocyte | 9.12e-09 | 59 |
mesenchymal cell | 1.43e-08 | 354 |
motile cell | 2.14e-08 | 386 |
connective tissue cell | 4.67e-08 | 361 |
somatic stem cell | 1.13e-07 | 433 |
multi fate stem cell | 1.17e-07 | 427 |
stem cell | 3.56e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.93e-10 | 76 |
bone element | 1.02e-09 | 82 |
skeletal system | 1.19e-09 | 100 |
skeletal element | 5.06e-09 | 90 |
musculoskeletal system | 2.44e-08 | 167 |
connective tissue | 2.30e-07 | 371 |
immune system | 6.49e-07 | 93 |