FFCP PHASE1:Hg19::chr3:196230551..196230576,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=165918 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26661 | |||
|TSSclassifier=strong | |||
|UniProt=F8WD60 | |||
|association_with_transcript=-3bp_to_ENST00000437070_5end | |||
|cluster_id=chr3:196230551..196230576,- | |||
|description=CAGE_peak_2_at_RNF168_5end | |||
|id=chr3:196230551..196230576,- | |||
|ontology_enrichment_celltype=CL:0000738!2.31e-27!140;CL:0000037!5.85e-27!172;CL:0000566!5.85e-27!172;CL:0002032!3.52e-24!165;CL:0000837!3.52e-24!165;CL:0000988!5.71e-24!182;CL:0002087!2.19e-19!119;CL:0002031!1.17e-18!124;CL:0000763!2.16e-16!112;CL:0000049!2.16e-16!112;CL:0000766!2.19e-16!76;CL:0000860!5.39e-16!45;CL:0002057!1.48e-14!42;CL:0000557!5.29e-14!71;CL:0002009!3.01e-12!65;CL:0002194!2.70e-11!63;CL:0000576!2.70e-11!63;CL:0000040!2.70e-11!63;CL:0000559!2.70e-11!63;CL:0000839!4.13e-11!70;CL:0000219!1.05e-07!390;CL:0000542!1.32e-07!53;CL:0000051!1.32e-07!53;CL:0000838!3.14e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.47e-13;33!CL:0002057;4.47e-13;33!CL:0000473;1.38e-10;39!CL:0000234;1.38e-10;39!CL:0000576;1.18e-07;48!CL:0000766;1.60e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.77e-26,136;CL:0000037,7.09e-26,168;CL:0000988,1.69e-23,177;CL:0002032,3.91e-23,161;CL:0000837,3.91e-23,161;CL:0002087,2.13e-18,115;CL:0002031,1.10e-17,120;CL:0000763,1.83e-15,108;CL:0000049,1.83e-15,108;CL:0000766,1.91e-15,72;CL:0000860,1.48e-14,42;CL:0002057,1.48e-14,42;CL:0000473,5.97e-14,48;CL:0000234,5.97e-14,48;CL:0000557,4.38e-13,67;CL:0002009,2.38e-11,61;CL:0002194,2.08e-10,59;CL:0000576,2.08e-10,59;CL:0000040,2.08e-10,59;CL:0000559,2.08e-10,59;CL:0000839,3.09e-10,66;CL:0000542,1.36e-07,53;CL:0000051,1.36e-07,53;CL:0000219,2.95e-07,386;CL:0000838,3.24e-07,52 | |||
|ontology_enrichment_development_v019=CL:0002057;1.22e-10;42 | |||
|ontology_enrichment_disease=DOID:162!4.48e-21!235;DOID:14566!1.86e-19!239;DOID:305!6.26e-17!106;DOID:0050687!9.44e-16!143;DOID:0050686!1.06e-10!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.48e-21,235;DOID:14566,1.86e-19,239;DOID:305,6.25e-17,106;DOID:0050687,9.44e-16,143;DOID:0050686,1.06e-10,137 | |||
|ontology_enrichment_uberon=UBERON:0001474!1.47e-13!86;UBERON:0002390!1.82e-12!102;UBERON:0003061!1.82e-12!102;UBERON:0002371!1.85e-12!80;UBERON:0004765!1.70e-09!101;UBERON:0001434!1.70e-09!101;UBERON:0002193!8.10e-09!112;UBERON:0002405!1.03e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.17e-12,82;UBERON:0002390,1.33e-11,98;UBERON:0003061,1.33e-11,98;UBERON:0002371,1.43e-11,76;UBERON:0004765,2.48e-09,90;UBERON:0002405,3.46e-08,93;UBERON:0002193,4.59e-08,108;UBERON:0001434,1.44e-07,100 | |||
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| |||
|short_description=p2@RNF168 | |||
}} |
Latest revision as of 15:36, 17 September 2015
Short description: | p2@RNF168 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF168_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_ENST00000437070_5end |
EntrezGene: | RNF168 |
HGNC: | 26661 |
UniProt: | F8WD60 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.77e-26 | 136 |
hematopoietic stem cell | 7.09e-26 | 168 |
hematopoietic cell | 1.69e-23 | 177 |
hematopoietic oligopotent progenitor cell | 3.91e-23 | 161 |
hematopoietic multipotent progenitor cell | 3.91e-23 | 161 |
nongranular leukocyte | 2.13e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 1.10e-17 | 120 |
myeloid cell | 1.83e-15 | 108 |
common myeloid progenitor | 1.83e-15 | 108 |
myeloid leukocyte | 1.91e-15 | 72 |
classical monocyte | 1.48e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.48e-14 | 42 |
defensive cell | 5.97e-14 | 48 |
phagocyte | 5.97e-14 | 48 |
granulocyte monocyte progenitor cell | 4.38e-13 | 67 |
macrophage dendritic cell progenitor | 2.38e-11 | 61 |
monopoietic cell | 2.08e-10 | 59 |
monocyte | 2.08e-10 | 59 |
monoblast | 2.08e-10 | 59 |
promonocyte | 2.08e-10 | 59 |
myeloid lineage restricted progenitor cell | 3.09e-10 | 66 |
lymphocyte | 1.36e-07 | 53 |
common lymphoid progenitor | 1.36e-07 | 53 |
motile cell | 2.95e-07 | 386 |
lymphoid lineage restricted progenitor cell | 3.24e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.17e-12 | 82 |
hematopoietic system | 1.33e-11 | 98 |
blood island | 1.33e-11 | 98 |
bone marrow | 1.43e-11 | 76 |
skeletal element | 2.48e-09 | 90 |
immune system | 3.46e-08 | 93 |
hemolymphoid system | 4.59e-08 | 108 |
skeletal system | 1.44e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.48e-21 | 235 |
disease of cellular proliferation | 1.86e-19 | 239 |
carcinoma | 6.25e-17 | 106 |
cell type cancer | 9.44e-16 | 143 |
organ system cancer | 1.06e-10 | 137 |