FFCP PHASE1:Hg19::chr13:49550733..49550806,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:49550733..49550806,+ to FFCP PHASE1:Hg19::chr13:49550733..49550806,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22862 | |EntrezGene=22862 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20296 | |HGNC=20296 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9X3 | |UniProt=G5E9X3 | ||
|association_with_transcript=-2bp_to_ENST00000484074_5end | |||
|cluster_id=chr13:49550733..49550806,+ | |||
|coexpression_cluster_id=C1708 | |||
|description=CAGE_peak_3_at_FNDC3A_5end | |||
|id=chr13:49550733..49550806,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.02e-25!76;CL:0000860!1.10e-24!45;CL:0002057!2.09e-23!42;CL:0000557!3.36e-22!71;CL:0000839!4.26e-21!70;CL:0002009!1.80e-20!65;CL:0002194!2.19e-20!63;CL:0000576!2.19e-20!63;CL:0000040!2.19e-20!63;CL:0000559!2.19e-20!63;CL:0000738!3.94e-15!140;CL:0002031!2.27e-12!124;CL:0002087!6.55e-12!119;CL:0000763!6.81e-11!112;CL:0000049!6.81e-11!112;CL:0002320!8.14e-08!365;CL:0000134!1.55e-07!358;CL:0000048!1.74e-07!430;CL:0002032!1.75e-07!165;CL:0000837!1.75e-07!165;CL:0000037!2.55e-07!172;CL:0000566!2.55e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.87e-20;33!CL:0002057;2.87e-20;33!CL:0000473;4.11e-17;39!CL:0000234;4.11e-17;39!CL:0000576;4.07e-14;48!CL:0000766;7.06e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.06e-23,48;CL:0000234,1.06e-23,48;CL:0000766,1.46e-23,72;CL:0000860,2.07e-23,42;CL:0002057,2.07e-23,42;CL:0000557,9.20e-21,67;CL:0000839,1.13e-19,66;CL:0002009,4.73e-19,61;CL:0002194,5.76e-19,59;CL:0000576,5.76e-19,59;CL:0000040,5.76e-19,59;CL:0000559,5.76e-19,59;CL:0000738,5.67e-14,136;CL:0002031,2.80e-11,120;CL:0002087,7.93e-11,115;CL:0000763,8.45e-10,108;CL:0000049,8.45e-10,108;CL:0002320,2.53e-07,361;CL:0000134,4.56e-07,354;CL:0000048,5.88e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.68e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.10e-20!80;UBERON:0002390!2.31e-17!102;UBERON:0003061!2.31e-17!102;UBERON:0001474!3.64e-17!86;UBERON:0004765!2.61e-15!101;UBERON:0001434!2.61e-15!101;UBERON:0002193!1.27e-14!112;UBERON:0002405!2.01e-14!115;UBERON:0002204!3.93e-10!167;UBERON:0000062!1.48e-08!511;UBERON:0002384!1.35e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.37e-19,76;UBERON:0002390,5.40e-16,98;UBERON:0003061,5.40e-16,98;UBERON:0001474,7.46e-16,82;UBERON:0002405,2.04e-15,93;UBERON:0004765,4.43e-15,90;UBERON:0001434,1.14e-14,100;UBERON:0002193,2.33e-13,108;UBERON:0002204,1.45e-09,167;UBERON:0002384,4.04e-07,371 | |||
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| ||
|short_description=p3@FNDC3A | |||
}} | }} |
Latest revision as of 16:27, 17 September 2015
Short description: | p3@FNDC3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FNDC3A_5end |
Coexpression cluster: | C1708_Mast_placenta_CD14_small_pituitary_non_parotid |
Association with transcript: | -2bp_to_ENST00000484074_5end |
EntrezGene: | FNDC3A |
HGNC: | 20296 |
UniProt: | G5E9X3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.06e-23 | 48 |
phagocyte | 1.06e-23 | 48 |
myeloid leukocyte | 1.46e-23 | 72 |
classical monocyte | 2.07e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.07e-23 | 42 |
granulocyte monocyte progenitor cell | 9.20e-21 | 67 |
myeloid lineage restricted progenitor cell | 1.13e-19 | 66 |
macrophage dendritic cell progenitor | 4.73e-19 | 61 |
monopoietic cell | 5.76e-19 | 59 |
monocyte | 5.76e-19 | 59 |
monoblast | 5.76e-19 | 59 |
promonocyte | 5.76e-19 | 59 |
leukocyte | 5.67e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 2.80e-11 | 120 |
nongranular leukocyte | 7.93e-11 | 115 |
myeloid cell | 8.45e-10 | 108 |
common myeloid progenitor | 8.45e-10 | 108 |
connective tissue cell | 2.53e-07 | 361 |
mesenchymal cell | 4.56e-07 | 354 |
multi fate stem cell | 5.88e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.37e-19 | 76 |
hematopoietic system | 5.40e-16 | 98 |
blood island | 5.40e-16 | 98 |
bone element | 7.46e-16 | 82 |
immune system | 2.04e-15 | 93 |
skeletal element | 4.43e-15 | 90 |
skeletal system | 1.14e-14 | 100 |
hemolymphoid system | 2.33e-13 | 108 |
musculoskeletal system | 1.45e-09 | 167 |
connective tissue | 4.04e-07 | 371 |