FFCP PHASE1:Hg19::chr7:20826426..20826432,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=221833 | |EntrezGene=221833 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19196 | |HGNC=19196 | ||
|TSSclassifier=strong | |||
|UniProt=G3XAB2,Q8IXZ3 | |UniProt=G3XAB2,Q8IXZ3 | ||
|association_with_transcript=72bp_to_ENST00000297210,ENST00000361443,ENST00000418710_5end | |||
|cluster_id=chr7:20826426..20826432,- | |||
|description=CAGE_peak_2_at_SP8_5end | |||
|id=chr7:20826426..20826432,- | |||
|ontology_enrichment_celltype=CL:0002322!1.17e-12!5;CL:0000047!1.94e-11!8;CL:0000540!8.77e-11!6;CL:0000031!8.77e-11!6;CL:0000404!8.77e-11!6;CL:0002605!6.13e-09!3;CL:0002319!1.12e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002605;3.43e-23;3!CL:0000039;3.75e-18;7!CL:0000586;3.75e-18;7!CL:0000128;2.83e-10;7!CL:0000126;2.83e-10;7!CL:0000127;2.83e-10;7!CL:0002319;1.18e-09;25!CL:0000333;6.76e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,3.44e-23,3;CL:0000039,3.22e-18,7;CL:0000586,3.22e-18,7;CL:0000128,2.83e-10,7;CL:0000126,2.83e-10,7;CL:0000127,2.83e-10,7;CL:0002453,2.83e-10,7;CL:0002319,1.08e-09,25;CL:0000047,3.09e-09,8;CL:0000133,1.18e-08,59;CL:0000221,6.62e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.08e-13;10!UBERON:0005564;9.08e-13;10 | |||
|ontology_enrichment_disease=DOID:305!3.63e-08!106;DOID:0050687!4.48e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.59e-16;22!DOID:2994;1.59e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.61e-16,22;DOID:2994,1.61e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0001893!4.74e-19!34;UBERON:0001017!8.55e-19!82;UBERON:0000956!8.72e-19!25;UBERON:0000203!8.72e-19!25;UBERON:0001869!2.73e-18!32;UBERON:0000073!5.98e-18!94;UBERON:0001016!5.98e-18!94;UBERON:0005743!1.45e-17!86;UBERON:0002791!1.87e-17!33;UBERON:0002020!8.04e-17!34;UBERON:0003528!8.04e-17!34;UBERON:0002780!4.61e-15!41;UBERON:0001890!4.61e-15!41;UBERON:0006240!4.61e-15!41;UBERON:0003080!1.33e-14!42;UBERON:0001049!2.16e-13!57;UBERON:0005068!2.16e-13!57;UBERON:0006241!2.16e-13!57;UBERON:0007135!2.16e-13!57;UBERON:0002619!2.42e-13!22;UBERON:0002616!9.18e-13!59;UBERON:0000955!2.05e-12!69;UBERON:0006238!2.05e-12!69;UBERON:0001950!2.50e-12!20;UBERON:0003056!1.00e-08!61;UBERON:0004121!1.24e-08!169;UBERON:0000924!3.01e-08!173;UBERON:0006601!3.01e-08!173;UBERON:0003075!4.03e-08!86;UBERON:0007284!4.03e-08!86;UBERON:0002346!1.54e-07!90;UBERON:0000922!5.54e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.53e-16;8!UBERON:0000956;1.16e-13;25!UBERON:0000203;1.16e-13;25!UBERON:0000922;1.52e-12;49!UBERON:0003135;1.27e-11;11!UBERON:0002791;2.78e-10;32!UBERON:0001869;3.14e-10;32!UBERON:0003528;1.12e-09;34!UBERON:0002020;1.12e-09;34!UBERON:0001893;9.39e-09;34!UBERON:0003101;1.12e-08;22!UBERON:0000079;1.12e-08;22!UBERON:0002780;4.97e-07;41!UBERON:0001890;4.97e-07;41!UBERON:0000013;6.76e-07;5!UBERON:0002410;6.76e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.71e-16,8;UBERON:0000956,1.23e-13,25;UBERON:0000203,1.23e-13,25;UBERON:0001016,1.11e-11,89;UBERON:0003135,1.15e-11,11;UBERON:0002791,1.40e-10,32;UBERON:0001869,1.40e-10,32;UBERON:0003528,6.26e-10,34;UBERON:0002020,6.26e-10,34;UBERON:0001893,6.26e-10,34;UBERON:0001017,2.48e-09,81;UBERON:0003101,1.08e-08,22;UBERON:0000079,1.08e-08,22;UBERON:0002780,3.82e-08,41;UBERON:0001890,3.82e-08,41;UBERON:0003080,3.82e-08,41;UBERON:0006240,3.82e-08,41;UBERON:0011216,1.21e-07,223;UBERON:0000013,7.63e-07,5;UBERON:0002410,7.63e-07,5 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,1.71741592278634,2.18999080116615,1.12988375635323,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.397589304964456,0.813357600086629,1.0366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55732473911449,0,0.773288812777695,2.34522771468088,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,0,0,0,0,0,0.716084698702437,0,0,0,0,0,0.0927680981618513,7.98455192004777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0.586993856796269,0,0,0,3.36680037793539,0,0.300646838828985,0,0,0.330991955875499,0,0,0,0,6.76882979507011,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0.316553979779393,0.195551382734803,0,0,0.19980960958213,0,7.10126896228677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.98975697164723,0,0,0,0,0,1.59045937961861,0,0.964518890790115,0.137539436597234,0,0,0,0.485996453264197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,1.53473245564382,0,1.10086159299127,0,0,0,0,0,0,0,0.80057074828547,0,0,0.642292250964595,0,0,0.41023272848151,7.05800749420811,0.138314504928436,0.322951291263702,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0,0,0.253663240775627,3.28184885410932,0,0,0,0,0,0,0,0,0,0,0,0,0.526182188502793,0,0.444925607568277,1.49136876415977,0,0,0.913158720509496,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0.701818390386317,0.397901550322736,0,7.11560316845448,0,0.150962843566674,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0.271965960763659,2.18175345170189,0,0,0,0,0.126166424835079,0,9.88248307889208,7.34319574142268,7.48208734743569,1.65410819162721,5.76627340372463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p2@SP8 | |||
}} | }} |
Latest revision as of 17:55, 17 September 2015
Short description: | p2@SP8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SP8_5end |
Coexpression cluster: | NA |
Association with transcript: | 72bp_to_ENST00000297210, ENST00000361443, ENST00000418710_5end |
EntrezGene: | SP8 |
HGNC: | 19196 |
UniProt: | G3XAB2Q8IXZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 3.44e-23 | 3 |
germ line cell | 3.22e-18 | 7 |
germ cell | 3.22e-18 | 7 |
oligodendrocyte | 2.83e-10 | 7 |
macroglial cell | 2.83e-10 | 7 |
astrocyte | 2.83e-10 | 7 |
oligodendrocyte precursor cell | 2.83e-10 | 7 |
neural cell | 1.08e-09 | 25 |
neuronal stem cell | 3.09e-09 | 8 |
neurectodermal cell | 1.18e-08 | 59 |
ectodermal cell | 6.62e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 5.71e-16 | 8 |
cerebral cortex | 1.23e-13 | 25 |
pallium | 1.23e-13 | 25 |
nervous system | 1.11e-11 | 89 |
male reproductive organ | 1.15e-11 | 11 |
regional part of telencephalon | 1.40e-10 | 32 |
cerebral hemisphere | 1.40e-10 | 32 |
brain grey matter | 6.26e-10 | 34 |
gray matter | 6.26e-10 | 34 |
telencephalon | 6.26e-10 | 34 |
central nervous system | 2.48e-09 | 81 |
male organism | 1.08e-08 | 22 |
male reproductive system | 1.08e-08 | 22 |
regional part of forebrain | 3.82e-08 | 41 |
forebrain | 3.82e-08 | 41 |
anterior neural tube | 3.82e-08 | 41 |
future forebrain | 3.82e-08 | 41 |
organ system subdivision | 1.21e-07 | 223 |
sympathetic nervous system | 7.63e-07 | 5 |
autonomic nervous system | 7.63e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.61e-16 | 22 |
germ cell cancer | 1.61e-16 | 22 |