FFCP PHASE1:Hg19::chr5:35857049..35857060,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3575 | |EntrezGene=3575 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6024 | |HGNC=6024 | ||
|TSSclassifier=strong | |||
|UniProt=D6RDM4 | |UniProt=D6RDM4 | ||
|association_with_transcript=55bp_to_ENST00000511982_5end | |association_with_transcript=55bp_to_ENST00000511982_5end | ||
|cluster_id=chr5:35857049..35857060,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_IL7R_5end | |description=CAGE_peak_3_at_IL7R_5end | ||
|id=chr5:35857049..35857060,+ | |id=chr5:35857049..35857060,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.83e-21!140;CL:0002087!4.11e-17!119;CL:0000791!1.72e-15!18;CL:0000789!1.72e-15!18;CL:0002420!1.72e-15!18;CL:0002419!1.72e-15!18;CL:0000790!1.72e-15!18;CL:0002031!5.49e-15!124;CL:0000037!5.44e-13!172;CL:0000566!5.44e-13!172;CL:0002032!1.59e-11!165;CL:0000837!1.59e-11!165;CL:0000988!2.18e-11!182;CL:0000625!7.09e-11!11;CL:0000766!7.37e-11!76;CL:0000084!3.45e-10!25;CL:0000827!3.45e-10!25;CL:0002194!2.19e-08!63;CL:0000576!2.19e-08!63;CL:0000040!2.19e-08!63;CL:0000559!2.19e-08!63;CL:0002009!2.44e-08!65;CL:0000838!3.22e-08!52;CL:0002057!4.47e-08!42;CL:0000557!6.23e-08!71;CL:0000542!7.48e-08!53;CL:0000051!7.48e-08!53;CL:0000839!1.16e-07!70;CL:0000860!2.44e-07!45 | |ontology_enrichment_celltype=CL:0000738!1.83e-21!140;CL:0002087!4.11e-17!119;CL:0000791!1.72e-15!18;CL:0000789!1.72e-15!18;CL:0002420!1.72e-15!18;CL:0002419!1.72e-15!18;CL:0000790!1.72e-15!18;CL:0002031!5.49e-15!124;CL:0000037!5.44e-13!172;CL:0000566!5.44e-13!172;CL:0002032!1.59e-11!165;CL:0000837!1.59e-11!165;CL:0000988!2.18e-11!182;CL:0000625!7.09e-11!11;CL:0000766!7.37e-11!76;CL:0000084!3.45e-10!25;CL:0000827!3.45e-10!25;CL:0002194!2.19e-08!63;CL:0000576!2.19e-08!63;CL:0000040!2.19e-08!63;CL:0000559!2.19e-08!63;CL:0002009!2.44e-08!65;CL:0000838!3.22e-08!52;CL:0002057!4.47e-08!42;CL:0000557!6.23e-08!71;CL:0000542!7.48e-08!53;CL:0000051!7.48e-08!53;CL:0000839!1.16e-07!70;CL:0000860!2.44e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.84e-25;18!CL:0000789;1.84e-25;18!CL:0002419;1.84e-25;18!CL:0000084;7.68e-19;25!CL:0000625;2.18e-18;11!CL:0000624;1.50e-10;6!CL:0002087;3.74e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.93e-25,18;CL:0000789,1.93e-25,18;CL:0002420,1.93e-25,18;CL:0002419,1.93e-25,18;CL:0000790,1.93e-25,18;CL:0000084,8.00e-19,25;CL:0000827,8.00e-19,25;CL:0000738,9.35e-19,136;CL:0000625,2.21e-18,11;CL:0002087,8.44e-16,115;CL:0000037,3.22e-12,168;CL:0002031,7.72e-12,120;CL:0000988,7.47e-11,177;CL:0000624,1.55e-10,6;CL:0002032,2.13e-10,161;CL:0000837,2.13e-10,161;CL:0000838,4.70e-10,52;CL:0000542,9.69e-10,53;CL:0000051,9.69e-10,53;CL:0000766,3.82e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000790;1.84e-25;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.24e-13!102;UBERON:0003061!4.24e-13!102;UBERON:0002193!5.99e-12!112;UBERON:0000178!9.82e-09!15;UBERON:0000179!9.82e-09!15;UBERON:0000463!9.82e-09!15 | |ontology_enrichment_uberon=UBERON:0002390!4.24e-13!102;UBERON:0003061!4.24e-13!102;UBERON:0002193!5.99e-12!112;UBERON:0000178!9.82e-09!15;UBERON:0000179!9.82e-09!15;UBERON:0000463!9.82e-09!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.91e-14;15!UBERON:0000179;1.91e-14;15!UBERON:0000463;1.91e-14;15!UBERON:0002390;7.69e-10;32!UBERON:0002193;8.85e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.98e-14,15;UBERON:0000179,1.98e-14,15;UBERON:0000463,1.98e-14,15;UBERON:0002390,9.73e-12,98;UBERON:0003061,9.73e-12,98;UBERON:0002193,2.51e-11,108 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.916960868975415,0.328402357799783,0.708397031823113,2.75354993794233,13.8178583314997,1.85779347979291,0,0,0,0.154934401160603,0.853015394924529,0,3.32397245119126,2.4065333696417,2.17010870715852,1.11957737119962,11.0123846446453,0.515151135268373,0.145398238779565,2.26725566213286,0.242584061187816,0.929716147622738,1.6446715520873,1.54853185447552,1.1507695692886,0.512321413058201,0.945928919554341,0.344745680736619,1.93645405075148,0,0.752969358170419,1.63743690034707,0.449446968890169,0.918251677112708,1.60464513538047,1.27867425159808,0.659702600373432,0.398927315243264,0,4.93355705668593,4.53908179752912,3.73693349397345,0,1.0429658368404,0.868755378820466,3.63239701580021,6.62899744777616,4.43047342417238,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.853460445133014,0,0,0,0,0,0.587237189370939,0.382273228125229,0,3.36305137788922,0,30.8834339078718,19.2575273747091,24.2609768819421,0,31.2885375968247,22.2520468695325,21.4309401248702,13.0350234555653,21.2116253381883,29.4640079796216,22.7475245562613,0.640456598628376,1.04047478047903,8.22189523018381,9.94860064029054,8.40428948631652,95.793119802691,107.818953720154,83.6284190439814,16.0899266630544,39.088490347396,39.8607836759851,78.9421439100849,73.5886107088663,44.2736748622365,41.8198899557285,60.2300476311091,70.9045825795478,81.2049722590248,68.1918485886769,36.129631864526,18.5478203766754,11.2324882229073,13.6134939649831,0,0,0,2.89151321907653,0.50133791063589,1.44846518960824,0,0.486634870302636,0.472674085820339,0,0.175669571386252,0.589405839739707,0,0,0,0.696518949197069,0.531831842075461,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,3.9534125230819,7.75560528296651,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0.277064115484183,0,1.22595118319608,0,0,8.07253360599879,2.13557388818567,1.27159140695737,2.40072876867522,0.824420233907511,2.31876486041066,2.79175284497385,2.02531598689519,1.07180705677318,2.01947019395292,1.74894807420369,0,4.26011511019937,1.81353776809752,0.847802961552438,0,0.818238361772504,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0.220587945464788,0.217879444092406,0.237270619111097,0.134831308160164,0.392442930250692,0,0,0,0,0,0,0,0,4.41463099414651,0,0.514703430895577,0,0,0,0,0,0,0,1.04337364477569,0,0,0,0.190254152234598,0,0,0.246217006087397,0.234004265139238,1.33768046059855,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0.414656231081544,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0.257207374262142,0,0,0.428933980974443,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0.239624855491583,0,0,1.88215698667853,0.205476322550383,0.179060963239896,0.112085143993527,11.8218456121156,7.97822026980214,8.98401253958239,0,0,0,0,0,0.749007023947182,0,2.07207756718018,0,0,0,0.415941723061614,0.713715955188647,0.946214490203608,0.35142424497814,0,0,0,0,0,0.521301686808497,0,0,30.8084358923102,14.6685656556659,14.1947651878581,0,0,0,0,0.460385919864187,0,0,0,0,0,0,0,0.164254312027618,0,0.116210378459959,0,0,0,1.49258782613989,0.546273504020151,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16386124460217,0.183138929636687,0.247528499761764,0,0,1.6068392984416,0,0,0.15350367472613,0.137836572484531,0,0,0.170453254832202,0,0,0,0.255225424989168,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0.571890581771475,0.255897791311334,0,0,0,1.43897966066652,0.274537029736055,0.471249609382746,0,0,0.421258456238981,0,0.487426979262569,0,0.272999822815972,0.282810863907425,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,2.54188262097304,0,0,0,0.918893600827838,32.4766469908588,22.1744790071289,24.494829048489,32.1612896868015,32.4976195738093,21.3996192693597,23.2213518012389,14.2762531732969,0,0,0,0,6.49211458394002,9.88871622542956,0,0,0,0,0,0,0.912938716132769,0,0,0,0.1605880751037,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,6.07824614168525,0,0.511343412510774,0,0.622079175323615,0,0,0,1.28236427328014,7.18449277040819,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0.615602068030377,0.797594390929008,0,0,0,0,1.00757352742049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,2.12298154808014,1.83309043480088,0,0.123563938946503,0,0,0,0,0,0,0,0,3.62972148145992,0,0.568679216656392,0.150323419414493,0,0,0,0,1.19472429772959,0,0,0,0,0,0.34945333648406,0,0.0967563312890851,0,0,0.872901148395775,0,0,0.274083849293502,0.993573058514948,0,0,0.240476460754601,0.85381197895741,0.19980960958213,0,0,0,0,0.621262677827163,0,3.66941356398758,5.85775939349066,0.917983958726896,0,0.600420288709789,0.136905378891993,0,0,0,0.558564802544508,0,0,0,0,0.223171457441873,0.0671834724867263,0.360299883542404,0,0,0,0,0,0.169346664131569,0,0,0,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| ||
|short_description=p3@IL7R | |short_description=p3@IL7R | ||
}} | }} |
Latest revision as of 18:38, 17 September 2015
Short description: | p3@IL7R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_IL7R_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 55bp_to_ENST00000511982_5end |
EntrezGene: | IL7R |
HGNC: | 6024 |
UniProt: | D6RDM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.93e-25 | 18 |
alpha-beta T cell | 1.93e-25 | 18 |
immature T cell | 1.93e-25 | 18 |
mature T cell | 1.93e-25 | 18 |
immature alpha-beta T cell | 1.93e-25 | 18 |
T cell | 8.00e-19 | 25 |
pro-T cell | 8.00e-19 | 25 |
leukocyte | 9.35e-19 | 136 |
CD8-positive, alpha-beta T cell | 2.21e-18 | 11 |
nongranular leukocyte | 8.44e-16 | 115 |
hematopoietic stem cell | 3.22e-12 | 168 |
hematopoietic lineage restricted progenitor cell | 7.72e-12 | 120 |
hematopoietic cell | 7.47e-11 | 177 |
CD4-positive, alpha-beta T cell | 1.55e-10 | 6 |
hematopoietic oligopotent progenitor cell | 2.13e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-10 | 161 |
lymphoid lineage restricted progenitor cell | 4.70e-10 | 52 |
lymphocyte | 9.69e-10 | 53 |
common lymphoid progenitor | 9.69e-10 | 53 |
myeloid leukocyte | 3.82e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
blood | 1.98e-14 | 15 |
haemolymphatic fluid | 1.98e-14 | 15 |
organism substance | 1.98e-14 | 15 |
hematopoietic system | 9.73e-12 | 98 |
blood island | 9.73e-12 | 98 |
hemolymphoid system | 2.51e-11 | 108 |